Robert I Cukier

发表

Machine learning can be used to distinguish protein families and generate new proteins belonging to those families.

Chi Jin, Robert I Cukier, R. Cukier, 2019, The Journal of chemical physics.

A combined ONIOM quantum chemical-molecular dynamics study of zinc-uracil bond breaking in yeast cytosine deaminase.

Honggao Yan, Lishan Yao, Robert I Cukier, 2006, The journal of physical chemistry. B.

Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase

Benoit Coulombe, Robert I Cukier, Zachary F Burton, 2012, BMC biophysics.

A molecular dynamics study comparing a wild‐type with a multiple drug resistant HIV protease: Differences in flap and aspartate 25 cavity dimensions

Robert I Cukier, R. Cukier, Steve A Seibold, 2007, Proteins.

Hamiltonian replica exchange method study of Escherichia coli and Yersinia pestis HPPK.

Li Su, Robert I Cukier, 2009, The journal of physical chemistry. B.

Transition paths of Met-enkephalin from Markov state modeling of a molecular dynamics trajectory.

Rahul Banerjee, Robert I Cukier, R. Cukier, 2014, The journal of physical chemistry. B.

Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase.

Michael Feig, Michael Hampsey, Benoit Coulombe, 2010, Biochimica et biophysica acta.

Absorption and fluorescence emission spectroscopic characters of size-expanded yDNA bases and effect of deoxyribose and base pairing.

Robert I Cukier, Laibin Zhang, Xiaohua Chen, 2009, The journal of physical chemistry. B.

Catalytic mechanism of yeast cytosine deaminase: an ONIOM computational study.

Stepan Sklenak, Honggao Yan, Lishan Yao, 2004, Journal of the American Chemical Society.

Conformational transition in signal transduction: metastable states and transition pathways in the activation of a signaling protein.

Rahul Banerjee, Honggao Yan, Robert I Cukier, 2015, The journal of physical chemistry. B.

Generating Intrinsically Disordered Protein Conformational Ensembles from a Database of Ramachandran Space Pair Residue Probabilities Using a Markov Chain.

Robert I Cukier, R. Cukier, 2018, The journal of physical chemistry. B.

Rational design of hetero-ring-expanded guanine analogs with enhanced properties for modified DNA building blocks.

Yuxiang Bu, Robert I Cukier, R. Cukier, 2007, The journal of physical chemistry. B.

Molecular dynamics of apo-adenylate kinase: a distance replica exchange method for the free energy of conformational fluctuations.

Robert I Cukier, R. Cukier, Hongfeng Lou, 2006, The journal of physical chemistry. B.

Reweighting ensemble probabilities with experimental histogram data constraints using a maximum entropy principle.

Robert I Cukier, R. Cukier, Hongfeng Lou, 2018, The Journal of chemical physics.

A molecular dynamics exploration of the catalytic mechanism of yeast cytosine deaminase.

Stepan Sklenak, Honggao Yan, Lishan Yao, 2005, The journal of physical chemistry. B.

Hetero-ring-expansion design for adenine-based DNA motifs: evidence from DFT calculations and molecular dynamics simulations.

Robert I Cukier, R. Cukier, Yuxiang Bu, 2009, The journal of physical chemistry. B.

Apo adenylate kinase encodes its holo form: a principal component and varimax analysis.

Robert I Cukier, R. Cukier, 2009, The journal of physical chemistry. B.

Molecular dynamics of apo-adenylate kinase: a principal component analysis.

Robert I Cukier, R. Cukier, Hongfeng Lou, 2006, The journal of physical chemistry. B.

Associative mechanism for phosphoryl transfer: A molecular dynamics simulation of Escherichia coli adenylate kinase complexed with its substrates

Harini Krishnamurthy, Robert I Cukier, C. Vieille, 2004, Proteins.

A molecular dynamics study of the ligand release path in yeast cytosine deaminase.

Honggao Yan, Lishan Yao, Robert I Cukier, 2007, Biophysical journal.