Kathryn E. Holt

发表

FastSpar: rapid and scalable correlation estimation for compositional data

Michael Inouye, Scott C. Ritchie, Stephen C. Watts, 2018, bioRxiv.

Performance of neural network basecalling tools for Oxford Nanopore sequencing

Ryan R. Wick, Louise M. Judd, Kathryn E. Holt, 2019, Genome Biology.

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data

Ryan R. Wick, Ruth M. Hall, Kathryn E. Holt, 2015, BMC Genomics.

Genomic Insights to Control the Emergence of Vancomycin-Resistant Enterococci

Torsten Seemann, Steven Y. C. Tong, Susan Ballard, 2013, mBio.

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health

Jonathan Wilksch, Constance Schultsz, Paul N. Newton, 2015, Proceedings of the National Academy of Sciences.

Completing bacterial genome assemblies with multiplex MinION sequencing

Ryan R. Wick, Louise M. Judd, Claire L. Gorrie, 2017, bioRxiv.

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

Justin Zobel, Bernard J. Pope, Michael Inouye, 2014 .

Unicycler: resolving bacterial genome assemblies from short and long sequencing reads

Ryan R. Wick, Louise M. Judd, Claire L. Gorrie, 2016, bioRxiv.

In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages

Michael Inouye, Myron M. Levine, Kathryn E. Holt, 2016, Microbial genomics.

Genomic history of the seventh pandemic of cholera in Africa

Julian Parkhill, Roland Grunow, Christiane Bouchier, 2017, Science.

Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection

David B. Ascher, Ryan R. Wick, Louise M. Judd, 2017, bioRxiv.

Population structure and antimicrobial resistance patterns of Salmonella Typhi isolates in Bangladesh from 2004 to 2016

Kathryn E. Holt, Firdausi Qadri, Gordon Dougan, 2019, bioRxiv.