Marc Hellmuth

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Indirect identification of horizontal gene transfer pdf

Peter F. Stadler, David Schaller, Manuel Lafond, 2020, Journal of Mathematical Biology.

Fast factorization of Cartesian products of (directed) hypergraphs

Marc Hellmuth, Florian Lehner, 2016, Theor. Comput. Sci..

Converting DNA to Music: ComposAlign

Todd Ingalls, Manja Marz, Georg Martius, 2009, GCB.

Generalized Fitch Relations II: Sets of Binary Relations that are explained by Edge-labeled Trees pdf

Peter F. Stadler, Marc Hellmuth, Carsten R. Seemann, 2019, ArXiv.

Partial Homology Relations - Satisfiability in Terms of Di-Cographs

Daniel Merkle, Nadia El-Mabrouk, Nicolas Wieseke, 2017, COCOON.

On the Design of RNA Sequences for Realizing Extended Shapes

Daniel Merkle, Martin Middendorf, Marc Hellmuth, 2009, 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing.

Complete Characterization of Incorrect Orthology Assignments in Best Match Graphs pdf

Peter F. Stadler, David Schaller, Marc Hellmuth, 2020, ArXiv.

Strong Products of Hypergraphs: Unique Prime Factorization Theorems and Algorithms

Marc Hellmuth, Manuel Noll, Lydia Ostermeier, 2014, Discret. Appl. Math..

From pairs of most similar sequences to phylogenetic best matches

Peter F. Stadler, David Schaller, Marc Hellmuth, 2020, Algorithms for Molecular Biology.

Partial Orthology, Paralogy and Xenology Relations - Satisfiability in terms of Di-Cographs pdf

Daniel Merkle, Nadia El-Mabrouk, Nicolas Wieseke, 2017, ArXiv.

Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps

Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, 2017, WABI.

Least resolved trees for two-colored best match graphs pdf

Peter F. Stadler, David Schaller, Marc Hellmuth, 2021, J. Graph Algorithms Appl..

The mathematics of xenology: di-cographs, symbolic ultrametrics, 2-structures and tree-representable systems of binary relations

Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth, 2016, Journal of Mathematical Biology.

Inference of Phylogenetic Trees from the Knowledge of Rare Evolutionary Events pdf

Peter F. Stadler, Marc Hellmuth, Yangjing Long, 2016, ArXiv.

Fast Factorization of Cartesian products of Hypergraphs pdf

Marc Hellmuth, Florian Lehner, 2015, ArXiv.

On the performance of de novo pathway enrichment

Jan Baumbach, Marc Hellmuth, Markus List, 2017, npj Systems Biology and Applications.

Local Prime Factor Decompositionof Approximate Strong Product Graphs

Marc Hellmuth, 2010 .

Complete Edge-Colored Permutation Graphs pdf

Peter F. Stadler, Max Bannach, Nicolas Wieseke, 2020, Adv. Appl. Math..

Square Property, Equitable Partitions, and Product-like Graphs pdf

Peter F. Stadler, Marc Hellmuth, Lydia Ostermeier, 2014, Discret. Math..

From event-labeled gene trees to species trees

Katharina T. Huber, Vincent Moulton, Peter F. Stadler, 2012, BMC Bioinformatics.

From Best Hits to Best Matches

Peter F. Stadler, David Schaller, Marc Hellmuth, 2020, 2001.00958.

Time-consistent reconciliation maps and forbidden time travel

Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, 2017, Algorithms for Molecular Biology.

Minimum cycle bases of lexicographic products

Peter F. Stadler, Marc Hellmuth, Philipp-Jens Ostermeier, 2012, Ars Math. Contemp..

Phylogenomics with paralogs

Martin Middendorf, Hans-Peter Lenhof, Peter F. Stadler, 2015, Proceedings of the National Academy of Sciences.

Partial Star Products: A Local Covering Approach for the Recognition of Approximate Cartesian Product Graphs

Wilfried Imrich, Marc Hellmuth, Tomas Kupka, 2013, Math. Comput. Sci..

Atom Tracking Using Cayley Graphs

Daniel Merkle, Marc Hellmuth, Nikolai Nøjgaard, 2020, ISBRA.

Techniques for the Cograph Editing Problem: Module Merge is equivalent to Editing P4s pdf

Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth, 2015, ArXiv.

Visualization of Graph Products

Gerik Scheuermann, Peter F. Stadler, Marc Hellmuth, 2010, IEEE Transactions on Visualization and Computer Graphics.

Hierarchical and Modularly-Minimal Vertex Colorings pdf

Peter F. Stadler, Marc Hellmuth, Manuela Geiß, 2020, Art Discret. Appl. Math..

Complexity of Modification Problems for Best Match Graphs pdf

Peter F. Stadler, David Schaller, Marc Hellmuth, 2020, ArXiv.

Convex cycle bases

Peter F. Stadler, Josef Leydold, Marc Hellmuth, 2014, Ars Math. Contemp..

Construction of Gene and Species Trees from Sequence Data incl. Orthologs, Paralogs, and Xenologs pdf

Nicolas Wieseke, Marc Hellmuth, Marc Hellmuth, 2016, ArXiv.

Associativity and Non-Associativity of Some Hypergraph Products

Richard Hammack, Peter F. Stadler, Marc Hellmuth, 2016, Math. Comput. Sci..

Generalized Fitch graphs II: Sets of binary relations that are explained by edge-labeled trees

Peter F. Stadler, Marc Hellmuth, Carsten R. Seemann, 2020, Discret. Appl. Math..

Merging Modules is equivalent to Editing P4's pdf

Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth, 2017, Art Discret. Appl. Math..

Generic Context-Aware Group Contributions.

Daniel Merkle, Christoph Flamm, Marc Hellmuth, 2020, IEEE/ACM transactions on computational biology and bioinformatics.

Generalized Fitch Graphs III: Symmetrized Fitch maps and Sets of Symmetric Binary Relations that are explained by Unrooted Edge-labeled Trees pdf

Peter F. Stadler, Marc Hellmuth, Carsten R. Seemann, 2020, ArXiv.

Best Match Graphs with Binary Trees pdf

Peter F. Stadler, David Schaller, Marc Hellmuth, 2020, AlCoB.

A Survey on Hypergraph Products

Peter F. Stadler, Marc Hellmuth, Lydia Ostermeier, 2012, Mathematics in Computer Science.

The matroid structure of representative triple sets and triple-closure computation

Marc Hellmuth, Carsten R. Seemann, Marc Hellmuth, 2017, Eur. J. Comb..

Reconstructing gene trees from Fitch’s xenology relation

Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth, 2017, Journal of Mathematical Biology.

On Symbolic Ultrametrics, Cotree Representations, and Cograph Edge Decompositions and Partitions

Nicolas Wieseke, Marc Hellmuth, Nicolas Wieseke, 2015, COCOON.

On the complexity of recognizing S-composite and S-prime graphs

Marc Hellmuth, 2013, Discret. Appl. Math..

Time-Consistent Reconciliation Maps and Forbidden Time Travel

Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, 2017 .

A Survey on Hypergraph Products (Erratum) pdf

Peter F. Stadler, Marc Hellmuth, Lydia Ostermeier, 2017, ArXiv.

The relaxed square property pdf

Peter F. Stadler, Marc Hellmuth, Tilen Marc, 2014, Australas. J Comb..

Reconstruction of time-consistent species trees pdf

Marc Hellmuth, Manuel Lafond, Marc Hellmuth, 2019, Algorithms for Molecular Biology.

Phylogenetics from paralogs

Hans-Peter Lenhof, Peter F. Stadler, Nicolas Wieseke, 2014 .

Extended shapes for the combinatorial design of RNA sequences

Daniel Merkle, Martin Middendorf, Marc Hellmuth, 2009, Int. J. Comput. Biol. Drug Des..

A local prime factor decomposition algorithm

Marc Hellmuth, 2011, Discret. Math..

Simulation of gene family histories

Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth, 2014, BMC Bioinformatics.

Hierarchical Colorings of Cographs pdf

Peter F. Stadler, Marc Hellmuth, Manuela Geiß, 2019, ArXiv.

On the Cartesian skeleton and the factorization of the strong product of digraphs pdf

Marc Hellmuth, Tilen Marc, Marc Hellmuth, 2014, Theor. Comput. Sci..

A Local Prime Factor Decomposition Algorithm for Strong Product Graphs pdf

Marc Hellmuth, Marc Hellmuth, 2011, Discret. Math..

From event-labeled gene trees with horizontal gene transfer to species trees pdf

Marc Hellmuth, Marc Hellmuth, M. Hellmuth, 2017, ArXiv.

Complexity of Modification Problems for Reciprocal Best Match Graphs

Peter F. Stadler, Marc Hellmuth, Manuela Geiß, 2019, Theor. Comput. Sci..

A Short Note on Undirected Fitch Graphs pdf

Peter F. Stadler, Marc Hellmuth, Yangjing Long, 2017, Art Discret. Appl. Math..

Linear Time Canonicalization and Enumeration of Non-Isomorphic 1-Face Embeddings

Daniel Merkle, Marc Hellmuth, Nikolai Nøjgaard, 2018, ALENEX.

Fast Recognition of Partial Star Products and Quasi Cartesian Products pdf

Wilfried Imrich, Marc Hellmuth, Tomas Kupka, 2015, Ars Math. Contemp..

Best match graphs and reconciliation of gene trees with species trees

Peter F. Stadler, Marc Hellmuth, Manuela Geiß, 2019, Journal of Mathematical Biology.

The Cartesian product of hypergraphs

Peter F. Stadler, Marc Hellmuth, Lydia Ostermeier, 2012, J. Graph Theory.

Simultaneous Credible Regions for Multiple Changepoint Locations

Marc Hellmuth, Volkmar Liebscher, Tobias Siems, 2016 .

A note on quasi-robust cycle bases

Peter F. Stadler, Josef Leydold, Marc Hellmuth, 2009, Ars Math. Contemp..

Local Algorithms for the Prime Factorization of Strong Product Graphs

Wilfried Imrich, Peter F. Stadler, Marc Hellmuth, 2009, Math. Comput. Sci..

Approximate graph products

Wilfried Imrich, Peter F. Stadler, Marc Hellmuth, 2009, Eur. J. Comb..

A Graph-Based Tool to Embed the π-Calculus into a Computational DPO Framework pdf

Daniel Merkle, Marco Peressotti, Marc Hellmuth, 2020, SOFSEM.

Diagonalized Cartesian products of s-prime graphs are s-prime

Peter F. Stadler, Marc Hellmuth, Lydia Ostermeier, 2012, Discret. Math..

Generalized Fitch Graphs: Edge-labeled Graphs that are explained by Edge-labeled Trees

Marc Hellmuth, Marc Hellmuth, M. Hellmuth, 2018, Discret. Appl. Math..

On tree representations of relations and graphs: symbolic ultrametrics and cograph edge decompositions

Nicolas Wieseke, Marc Hellmuth, Nicolas Wieseke, 2015, J. Comb. Optim..

Spiders can be Recognized by Counting Their Legs

Peter F. Stadler, Marc Hellmuth, Adrian Fritz, 2015, Math. Comput. Sci..

Biologically feasible gene trees, reconciliation maps and informative triples

Marc Hellmuth, Marc Hellmuth, M. Hellmuth, 2017, Algorithms for Molecular Biology.

Heuristic algorithms for best match graph editing

Peter F. Stadler, David Schaller, Marc Hellmuth, 2021, Algorithms Mol. Biol..

Planar Median Graphs and Cubesquare-Graphs pdf

Vincent Moulton, Peter F. Stadler, Marc Hellmuth, 2021, Discret. Appl. Math..

Cayley Graphs of Semigroups Applied to Atom Tracking in Chemistry

Daniel Merkle, Walter Fontana, Marc Hellmuth, 2021, J. Comput. Biol..

Compatibility of Partitions, Hierarchies, and Split Systems pdf

Peter F. Stadler, David Schaller, Marc Hellmuth, 2021, ArXiv.

Pseudo-Cographs, Polar-Cats and Level-1 Network Explainable Graphs pdf

Marc Hellmuth, Guillaume E. Scholz, Marc Hellmuth, 2021, ArXiv.

Construction of k-matchings and k-regular subgraphs in graph products pdf

Marc Hellmuth, Anna Lindeberg, Marc Hellmuth, 2021, ArXiv.

From Modular Decomposition Trees to Rooted Median Graphs pdf

Peter F. Stadler, Marc Hellmuth, Carmen Bruckmann, 2021, Discret. Appl. Math..

Compatibility of Partitions with Trees, Hierarchies, and Split Systems

Peter F. Stadler, David Schaller, Marc Hellmuth, 2021 .

Arc-Completion of 2-Colored Best Match Graphs to Binary-Explainable Best Match Graphs

Peter F. Stadler, David Schaller, Marc Hellmuth, 2021, Algorithms.

Quasi-Best Match Graphs

Peter F. Stadler, David Schaller, Marc Hellmuth, 2021 .

Complexity of Modification Problems for Best Match Graphs

Peter F. Stadler, David Schaller, Marc Hellmuth, 2020, Theor. Comput. Sci..

Orientation of Fitch Graphs and Detection of Horizontal Gene Transfer in Gene Trees pdf

Peter F. Stadler, David Schaller, Marc Hellmuth, 2021, ArXiv.

A Linear-Time Algorithm for the Common Refinement of Rooted Phylogenetic Trees on a Common Leaf Set pdf

Peter F. Stadler, David Schaller, Marc Hellmuth, 2021, ArXiv.

Combining Orthology and Xenology Data in a Common Phylogenetic Tree pdf

Peter F. Stadler, David Schaller, Marc Hellmuth, 2021, Advances in Bioinformatics and Computational Biology.

A simpler linear-time algorithm for the common refinement of rooted phylogenetic trees on a common leaf set

David Schaller, Marc Hellmuth, Peter F Stadler, 2021, Algorithms for molecular biology : AMB.

From Sequence Data Including Orthologs, Paralogs, and Xenologs to Gene and Species Trees

Nicolas Wieseke, Marc Hellmuth, Marc Hellmuth, 2016 .

Orthology relations, symbolic ultrametrics, and cographs

Katharina T. Huber, Vincent Moulton, Peter F. Stadler, 2013, Journal of mathematical biology.

LARGEST EIGENVALUES OF THE DISCRETE P-LAPLACIAN OF TREES WITH DEGREE SEQUENCES ∗

Josef Leydold, Marc Hellmuth, J. Leydold, 2009 .