Zohar Yakhini

发表

ENViz: a Cytoscape App for integrated statistical analysis and visualization of sample-matched data with multiple data types

Michael L. Creech, Israel Steinfeld, Roy Navon, 2015, Bioinform..

SMARTIV: combined sequence and structure de-novo motif discovery for in-vivo RNA binding data

Yael Mandel-Gutfreund, Zohar Yakhini, Maya Polishchuk, 2018, Nucleic Acids Res..

Dotted interval graphs

Moshe Lewenstein, Ron Y. Pinter, Yonatan Aumann, 2012, TALG.

Exploratory Visualization of Array-Based Comparative Genomic Hybridization

Robert Kincaid, Zohar Yakhini, Amir Ben-Dor, 2005, Inf. Vis..

Clustering Gene Expression Patterns

Ron Shamir, Zohar Yakhini, Amir Ben-Dor, 1999, J. Comput. Biol..

SOLQC: Synthetic Oligo Library Quality Control Tool.

Eitan Yaakobi, Omer Sabary, Leon Anavy, 2020, Bioinformatics.

BioLEGO — a web-based application for biorefinery design and evaluation of serial biomass fermentation

Zohar Yakhini, Edward Vitkin, Alexander Golberg, 2015 .

Towards optimally multiplexed applications of universal DNA tag systems

Roded Sharan, Benno Schwikowski, Tzvika Hartman, 2003, RECOMB '03.

BMC Bioinformatics BioMed Central

Israel Steinfeld, Roy Navon, Zohar Yakhini, 2008 .

Autoencoder Image Interpolation by Shaping the Latent Space

Yacov Hel-Or, Zohar Yakhini, Alon Oring, 2020, ICML.

IoT or NoT: Identifying IoT Devices in a Short Time Scale

Anat Bremler-Barr, Zohar Yakhini, Haim Levy, 2019, NOMS 2020 - 2020 IEEE/IFIP Network Operations and Management Symposium.

A supervised approach for identifying discriminating genotype patterns and its application to breast cancer data

Roded Sharan, Eytan Ruppin, Nir Yosef, 2007, Bioinform..

RNAPattMatch: a web server for RNA sequence/structure motif detection based on pattern matching with flexible gaps

Danny Barash, Zohar Yakhini, Maya Polishchuk, 2015, Nucleic Acids Res..

Finding approximate tandem repeats in genomic sequences.

Dan Geiger, Zohar Yakhini, Ydo Wexler, 2005, Journal of computational biology : a journal of computational molecular cell biology.

Efficient calculation of interval scores for DNA copy number data analysis.

Yonatan Aumann, Nathan Linial, Zohar Yakhini, 2006 .

Finding approximate tandem repeats in genomic sequences

Dan Geiger, Zohar Yakhini, Ydo Wexler, 2004, RECOMB.

Semi-supervised class discovery using quantitative phenotypes – CVD as a case study

Israel Steinfeld, Roy Navon, Zohar Yakhini, 2007, BMC Bioinformatics.

Discovering local structure in gene expression data: the order-preserving submatrix problem.

Richard M. Karp, Zohar Yakhini, Benny Chor, 2003 .

Methods for Analysis and Visualization of SNP Genotype Data for Complex Diseases

Zohar Yakhini, Amir Ben-Dor, Nancy Cox, 2002, Pacific Symposium on Biocomputing.

Zohar Yakhini, Oleg Rokhlenko, Ydo Wexler, 2007, Bioinform..

Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis

Yonatan Aumann, Nathan Linial, Zohar Yakhini, 2005, RECOMB.

Designing optimally multiplexed SNP genotyping assays

Yonatan Aumann, Zohar Yakhini, Efrat Manisterski, 2003, J. Comput. Syst. Sci..

Faithful Autoencoder Interpolation by Shaping the Latent Space pdf

Yacov Hel-Or, Zohar Yakhini, Alon Oring, 2020, ArXiv.

Mutual Enrichment in Ranked Lists and the Statistical Assessment of Position Weight Matrix Motifs

Zohar Yakhini, Limor Leibovich, 2013, WABI.

A High-Throughput Approach for Associating microRNAs with Their Activity Conditions

Ron Y. Pinter, Michal Ziv-Ukelson, Zohar Yakhini, 2005, RECOMB.

Clustering gene expression patterns

Zohar Yakhini, Amir Ben-Dor, R. Shamir, 1999, J. Comput. Biol..

Improved DNA based storage capacity and fidelity using composite DNA letters

Leon Anavy, Zohar Yakhini, Roee Amit, 2018, bioRxiv.

Multiplexing schemes for generic SNP genotyping assays.

Roded Sharan, Jens Gramm, Zohar Yakhini, 2005, Journal of computational biology : a journal of computational molecular cell biology.

Method and system for determining the orientation of a microarray

Zohar Yakhini, Glenda C. Redwood City Delenstarr, Cynthia Y. Enderwick, 2001 .

Universal DNA Tag Systems: A Combinatorial Design Scheme

Richard M. Karp, Benno Schwikowski, Zohar Yakhini, 2000, J. Comput. Biol..

On the Sample Complexity of Learning Bayesian Networks

Nir Friedman, Zohar Yakhini, N. Friedman, 1996, UAI.

Mutual enrichment in aggregated ranked lists with applications to gene expression regulation

Yael Mandel-Gutfreund, Zohar Yakhini, Ilona Kifer, 2017, Bioinform..

Extending partial haplotypes to full genome haplotypes using chromosome conformation capture data

Zohar Yakhini, Benny Chor, Shay Ben-Elazar, 2016, Bioinform..

Class discovery in gene expression data

Nir Friedman, Zohar Yakhini, Amir Ben-Dor, 2001, RECOMB.

Mutual enrichment in ranked lists and the statistical assessment of position weight matrix motifs

Zohar Yakhini, Limor Leibovich, Z. Yakhini, 2013, Algorithms for Molecular Biology.

Linear-Regression on Packed Encrypted Data in the Two-Server Model

Mor Weiss, Zohar Yakhini, Hayim Shaul, 2019, IACR Cryptol. ePrint Arch..

Using Expression Data to Discover RNA and DNA Regulatory Sequence Motifs

Eleazar Eskin, Zohar Yakhini, Chaya Ben-Zaken Zilberstein, 2004, Regulatory Genomics.

Designing Optimally Multiplexed SNP Genotyping Assays

Yonatan Aumann, Zohar Yakhini, Efrat Manisterski, 2003, WABI.

Discovering local structure in gene expression data: the order-preserving submatrix problem

Richard M. Karp, Zohar Yakhini, Benny Chor, 2002, RECOMB '02.

Universal DNA tag systems: a combinatorial design scheme

Richard M. Karp, Benno Schwikowski, Zohar Yakhini, 2000, RECOMB '00.

Optimization of probe coverage for high-resolution oligonucleotide aCGH

Yonatan Aumann, Zohar Yakhini, Doron Lipson, 2007, Bioinform..

Joint Analysis of DNA Copy Numbers and Gene Expression Levels

Zohar Yakhini, Amir Ben-Dor, Elinor Dehan, 2004, WABI.

SOLQC : Synthetic Oligo Library Quality Control Tool

Eitan Yaakobi, Omer Sabary, Leon Anavy, 2019, bioRxiv.

DRIMust: a web server for discovering rank imbalanced motifs using suffix trees

Yael Mandel-Gutfreund, Zohar Yakhini, Inbal Paz, 2013, Nucleic Acids Res..

A Distance-Based Branch and Bound Feature Selection Algorithm

Dan Geiger, Zohar Yakhini, Ari Frank, 2002, UAI.

Predicting Methylation from Sequence and Gene Expression Using Deep Learning with Attention

Zohar Yakhini, Vessela N. Kristensen, Xavier Tekpli, 2019, AlCoB.

A High-Throughput Approach for Associating microRNAs with Their Activity Conditions

Ron Y. Pinter, Michal Ziv-Ukelson, Zohar Yakhini, 2005, RECOMB.

Analysis of SNP-Expression Association Matrices

Roded Sharan, Zohar Yakhini, Anya Tsalenko, 2005, CSB.

Dotted interval graphs and high throughput genotyping

Moshe Lewenstein, Ron Y. Pinter, Yonatan Aumann, 2005, SODA '05.

Clinically driven semi-supervised class discovery in gene expression data

Israel Steinfeld, Roy Navon, Zohar Yakhini, 2008, ECCB.

Mutual enrichment in aggregated ranked lists with applications to gene expression regulation

Yael Mandel-Gutfreund, Zohar Yakhini, Ilona Kifer, 2016, Bioinform..

Informatics to support high-throughput research in steroid metabolomics

Zohar Yakhini, Edward Vitkin Amir BenDor, 2015 .

Designing Specific Oligonucleotide Probes for the Entire S. cerevisiae Transcriptome

Peter Webb, Zohar Yakhini, Doron Lipson, 2002, WABI.

Tissue classification with gene expression profiles.

Nir Friedman, Zohar Yakhini, Iftach Nachman, 2000 .

Cancer computational biology

Igor Jurisica, Zohar Yakhini, Z. Yakhini, 2011, BMC Bioinformatics.

Tissue classification with gene expression profiles

Nir Friedman, Zohar Yakhini, Amir Ben-Dor, 2000, RECOMB '00.

Discovering Motifs in Ranked Lists of DNA Sequences

Zohar Yakhini, Sivan Yogev, Eran Eden, 2007, PLoS Comput. Biol..

Optimizing analytical depth and cost efficiency of IEF-LC/MS proteomics

Ping Xu, Zohar Yakhini, Amir Ben-Dor, 2014, BIBM.

Analysis of SNP-expression association matrices

Roded Sharan, Zohar Yakhini, Anya Tsalenko, 2006, 2005 IEEE Computational Systems Bioinformatics Conference (CSB'05).

Data storage in DNA with fewer synthesis cycles using composite DNA letters

Leon Anavy, Zohar Yakhini, Roee Amit, 2019, Nature Biotechnology.

Towards Optimally Multiplexed Applications of Universal Arrays

Roded Sharan, Richard M. Karp, Benno Schwikowski, 2004, J. Comput. Biol..

Optimizing analytical depth and cost efficiency of IEF-LC/MS proteomics

Zohar Yakhini, Amir Ben-Dor, Ilona Kifer, 2014, 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Multiplexing Schemes for Generic SNP Genotyping Assays

Zohar Yakhini, Amir Ben-Dor, Roded Sharan, 2004, Pacific Symposium on Biocomputing.

Framework for Identifying Common Aberrations in DNA Copy Number Data

John N. Weinstein, Zohar Yakhini, Anya Tsalenko, 2007, RECOMB.

Autoencoder Image Interpolation by Shaping the Latent Space

Yacov Hel-Or, Zohar Yakhini, Alon Oring, 2021, ICML.

On the stability of log-rank test under labeling errors

Zohar Yakhini, Ben Galili, Anat Samohi, 2021, Bioinform..

Sequence Reconstruction Under Stutter Noise in Enzymatic DNA Synthesis

Eitan Yaakobi, Omer Sabary, Leon Anavy, 2021, 2021 IEEE Information Theory Workshop (ITW).

Assessing heterogeneity in spatial data using the HTA index with applications to spatial transcriptomics and imaging

Zohar Yakhini, Xavier Tekpli, Alona Levy-Jurgenson, 2021, Bioinform..

Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer

Zohar Yakhini, Howard Cedar, Itamar Simon, 2007, Nature Genetics.

Retinoic acid receptor alpha is associated with tamoxifen resistance in breast cancer

Zohar Yakhini, Jenny Forshed, Janne Lehtiö, 2013, Nature Communications.

Serum N‐glycan analysis in breast cancer patients – Relation to tumour biology and clinical outcome

Israel Steinfeld, Zohar Yakhini, Ilona Kifer, 2016, Molecular oncology.

Novel Rank-Based Statistical Methods Reveal MicroRNAs with Differential Expression in Multiple Cancer Types

Israel Steinfeld, Zohar Yakhini, Anya Tsalenko, 2009, PloS one.

miRNA-mRNA Integrated Analysis Reveals Roles for miRNAs in Primary Breast Tumors

Israel Steinfeld, Zohar Yakhini, Vessela N. Kristensen, 2011, PloS one.

Extending partial haplotypes to full genome haplotypes using chromosome conformation capture data

Zohar Yakhini, Benny Chor, Shay Ben-Elazar, 2016 .

Using Restriction Enzymes to Improve Sequencing by Hybridization

Sagi Snir, Zohar Yakhini, Benny Chor, 2002 .

Proposed design of distributed macroalgal biorefineries: thermodynamics, bioconversion technology, and sustainability implications for developing economies

Zohar Yakhini, Martin L. Yarmush, Alexander Golberg, 2014 .

Systematic Determination of Replication Activity Type Highlights Interconnections between Replication, Chromatin Structure and Nuclear Localization

Yonina C. Eldar, Zohar Yakhini, Itamar Simon, 2012, PloS one.

Array CGH analysis of copy number variation identifies 1284 new genes variant in healthy white males: implications for association studies of complex diseases.

Philippe Froguel, Zohar Yakhini, Anya Tsalenko, 2007, Human molecular genetics.

Association of N-glycosylation with breast carcinoma and systemic features using high-resolution quantitative UPLC.

Israel Steinfeld, Zohar Yakhini, Ilona Kifer, 2014, Journal of proteome research.

Efficient motif search in ranked lists and applications to variable gap motifs

Zohar Yakhini, Limor Leibovich, Z. Yakhini, 2012, Nucleic acids research.

Probing the effect of promoters on noise in gene expression using thousands of designed sequences

Eran Segal, Zohar Yakhini, David van Dijk, 2014, Genome research.

Scoring Genes for Relevance

Nir Friedman, Zohar Yakhini, Amir Ben-Dor, 2000 .

A structural-based statistical approach suggests a cooperative activity of PUM1 and miR-410 in human 3'-untranslated regions

Yael Mandel-Gutfreund, Zohar Yakhini, Limor Leibovich, 2010, Silence.

Correction: miRNA-mRNA Integrated Analysis Reveals Roles for miRNAs in Primary Breast Tumors

Israel Steinfeld, Zohar Yakhini, Vessela N. Kristensen, 2013, PLoS ONE.

Comparative genomic hybridization using oligonucleotide microarrays and total genomic DNA.

Robert Kincaid, Zohar Yakhini, Paul S. Meltzer, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Global organization of replication time zones of the mouse genome.

Zohar Yakhini, Alon Goren, Doron Lipson, 2008, Genome research.

A Novel Translocation Breakpoint within the BPTF Gene Is Associated with a Pre-Malignant Phenotype

Shalom Madar, Ido Goldstein, Varda Rotter, 2010, PloS one.

miRNA target enrichment analysis reveals directly active miRNAs in health and disease

Israel Steinfeld, Zohar Yakhini, Z. Yakhini, 2012, Nucleic acids research.

Novel Role for the Potent Endogenous Inotrope Apelin in Human Cardiac Dysfunction

Euan A Ashley, Zohar Yakhini, Anya Tsalenko, 2003, Circulation.

Comparative Analysis of DNA Replication Timing Reveals Conserved Large-Scale Chromosomal Architecture

Amos Tanay, Zohar Yakhini, Eitan Yaffe, 2010, PLoS genetics.

A combined sequence and structure based method for discovering enriched motifs in RNA from in vivo binding data.

Yael Mandel-Gutfreund, Zohar Yakhini, Maya Polishchuk, 2017, Methods.

Identification of endothelial cell genes by combined database mining and microarray analysis.

George Matcuk, Zohar Yakhini, Anya Tsalenko, 2003, Physiological genomics.

Molecular rules governing de novo methylation in cancer.

Israel Steinfeld, Zohar Yakhini, Howard Cedar, 2014, Cancer research.

Analysis of Expression Patterns: The Scope of the Problem, the Problem of Scope

Zohar Yakhini, Amir Ben-Dor, Edward Dougherty, 2002, Disease markers.

Gene expression analysis reveals matrilysin as a key regulator of pulmonary fibrosis in mice and humans

Naftali Kaminski, Zohar Yakhini, John Allard, 2002, Proceedings of the National Academy of Sciences of the United States of America.

SBH Performance on Genomic Sequences 1 Sequencing by Hybridization – A Simulation Study of Performance on Genomic Sequences

Zohar Yakhini, Dolev Dotan, Doron Lipson, 2001 .

Developmental programming of CpG island methylation profiles in the human genome

Israel Steinfeld, Zohar Yakhini, Howard Cedar, 2009, Nature Structural &Molecular Biology.

Gene expression and the concept of the phenotype.

Zohar Yakhini, Ayelet Shavit, Ohad Nachtomy, 2007, Studies in history and philosophy of biological and biomedical sciences.

EGF Decreases the Abundance of MicroRNAs That Restrain Oncogenic Transcription Factors

Eran Segal, Israel Steinfeld, Zohar Yakhini, 2010, Science Signaling.