Robyn M. Kaake

发表

Computational Prediction and Experimental Verification of New MAP Kinase Docking Sites and Substrates Including Gli Transcription Factors

Pierre Baldi, Lan Huang, Jeffrey S. Rogers, 2010, PLoS Comput. Biol..

Biophysical basis of cellular multi-specificity encoded in a model molecular switch

Robyn M. Kaake, Gwendolyn M. Jang, Christopher J. P. Mathy, 2020, bioRxiv.

A SARS-CoV-2 Protein Interaction Map Reveals Targets for Drug-Repurposing

Benjamin J. Polacco, Robyn M. Kaake, Gwendolyn M. Jang, 2020, Nature.

The Global Phosphorylation Landscape of SARS-CoV-2 Infection

Andrew R. Leach, Anna Gaulton, Aurelien Dugourd, 2020, Cell.

Selective enrichment and identification of azide-tagged cross-linked peptides using chemical ligation and mass spectrometry

Robyn M. Kaake, Lan Huang, Athit Kao, 2010, Journal of the American Society for Mass Spectrometry.

Signal-induced disassembly of the SCF ubiquitin ligase complex by Cdc48/p97.

Robyn M. Kaake, Lan Huang, P. Kaiser, 2012, Molecular cell.

A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing

Trey Ideker, Claudia Hernandez-Armenta, Brian K. Shoichet, 2020, bioRxiv.

Structural Basis of CD4 Downregulation by HIV-1 Nef

Robyn M. Kaake, N. Krogan, A. Sali, 2020, Nature Structural & Molecular Biology.

Structural Basis of CD4 Downregulation by HIV-1 Nef

Robyn M. Kaake, N. Krogan, A. Sali, 2020, Nature Structural & Molecular Biology.

Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms

Miguel Correa Marrero, Robyn M. Kaake, Gwendolyn M. Jang, 2020, Science.

B . 5 Using Selective Reaction Monitoring ( SRM ) Mass Spectrometry To Unmask Regulatory Feedback Loops Controlling Adipogenesis

Robyn M. Kaake, S. Guan, C. Hoogland, 2014 .

RNA Binding and Core Complexes Constitute the U-Insertion/Deletion Editosome

Robyn M. Kaake, S. Monti, Lan Huang, 2014, Molecular and Cellular Biology.

The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity

Robyn M. Kaake, H. V. Bakel, S. Chanda, 2017, Cell.

From systems to structure — using genetic data to model protein structures

Robyn M. Kaake, N. Krogan, A. Sali, 2022, Nature Reviews Genetics.

EpCAM homo-oligomerization is not the basis for its role in cell-cell adhesion

Seung Joong Kim, Robyn M. Kaake, N. Krogan, 2018, Scientific Reports.

Combining docking site and phosphosite predictions to find new substrates: identification of smoothelin-like-2 (SMTNL2) as a c-Jun N-terminal kinase (JNK) substrate.

Pierre Baldi, Vishal R. Patel, Lee Bardwell, 2013, Cellular signalling.

A BAG3 chaperone complex maintains cardiomyocyte function during proteotoxic stress.

Robyn M. Kaake, N. Krogan, B. Conklin, 2017, JCI insight.

De novo protein identification in mammalian sperm using high-resolution in situ cryo-electron tomography

Benjamin J. Polacco, Robyn M. Kaake, N. Krogan, 2022, bioRxiv.

A systems approach to infectious disease

Robyn M. Kaake, N. Krogan, J. Hultquist, 2020, Nature Reviews Genetics.

Protein Interaction Mapping Identifies RBBP6 as a Negative Regulator of Ebola Virus Replication

Robyn M. Kaake, Gwendolyn M. Jang, N. Krogan, 2018, Cell.

Ty3 Retrotransposon Hijacks Mating Yeast RNA Processing Bodies to Infect New Genomes

Robyn M. Kaake, K. Nagashima, Lan Huang, 2015, PLoS genetics.

Characterization of an A3G-VifHIV-1-CRL5-CBFβ Structure Using a Cross-linking Mass Spectrometry Pipeline for Integrative Modeling of Host–Pathogen Complexes

Seung Joong Kim, Robyn M. Kaake, N. Krogan, 2021, Molecular & cellular proteomics : MCP.

Oxidative Stress-Mediated Regulation of Proteasome Complexes*

Lan Huang, Robyn M. Kaake, Lan Huang, 2011, Molecular & Cellular Proteomics.

Mapping the Protein Interaction Network of the Human COP9 Signalosome Complex Using a Label-free QTAX Strategy*

Vishal R. Patel, Robyn M. Kaake, P. Baldi, 2012, Molecular & Cellular Proteomics.

Hybrid Gene Origination Creates Human-Virus Chimeric Proteins during Infection

Robyn M. Kaake, N. Krogan, J. Yewdell, 2020, Cell.

Protein interaction landscapes revealed by advanced in vivo cross-linking–mass spectrometry

Robyn M. Kaake, Peter R. Baker, Ilan E. Chemmama, 2021, Proceedings of the National Academy of Sciences.

Profiling of Protein Interaction Networks of Protein Complexes Using Affinity Purification and Quantitative Mass Spectrometry*

Lan Huang, Robyn M. Kaake, Lan Huang, 2010, Molecular & Cellular Proteomics.

Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy.

Natasa Przulj, Lan Huang, Tijana Milenković, 2010, Journal of proteome research.

Proteomic Approaches to Study SARS-CoV-2 Biology and COVID-19 Pathology

Robyn M. Kaake, N. Krogan, Ruth Hüttenhain, 2021, Journal of proteome research.

Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13

Robyn M. Kaake, A. Sali, R. Stroud, 2023, Nature Structural & Molecular Biology.

A New in Vivo Cross-linking Mass Spectrometry Platform to Define Protein–Protein Interactions in Living Cells*

Jicheng Duan, Lan Huang, Robyn M. Kaake, 2014, Molecular & Cellular Proteomics.

Systems-level effects of allosteric perturbations to a model molecular switch

Robyn M. Kaake, Gwendolyn M. Jang, Christopher J. P. Mathy, 2021, Nature.

Functional analysis of a common BAG3 allele associated with protection from heart failure

Robyn M. Kaake, N. Krogan, B. Conklin, 2021, bioRxiv.

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing

Robyn M. Kaake, Gwendolyn M. Jang, Matthew J. O’Meara, 2020, Nature.

Synthesis of two new enrichable and MS-cleavable cross-linkers to define protein-protein interactions by mass spectrometry.

Robyn M. Kaake, Lan Huang, Athit Kao, 2015, Organic & biomolecular chemistry.

Characterizing the dynamics of proteasome complexes by proteomics approaches.

Robyn M. Kaake, Lan Huang, Athit Kao, 2014, Antioxidants & redox signaling.

EpCAM homo-oligomerization is not the basis for its role in cell-cell adhesion

Seung Joong Kim, Robyn M. Kaake, N. Krogan, 2018, Scientific Reports.

A systems approach to infectious disease

Robyn M. Kaake, N. Krogan, J. Hultquist, 2020, Nature Reviews Genetics.

Signal-induced disassembly of the SCF ubiquitin ligase complex by Cdc48/p97.

Robyn M. Kaake, Lan Huang, P. Kaiser, 2012, Molecular cell.

Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy.

Robyn M. Kaake, T. Milenković, Natasa Przulj, 2010, Journal of proteome research.

De novo protein identification in mammalian sperm using in situ cryoelectron tomography and AlphaFold2 docking

Benjamin J. Polacco, Robyn M. Kaake, N. Krogan, 2023, Cell.

Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13

Robyn M. Kaake, A. Sali, R. Stroud, 2023, bioRxiv.

Computational Prediction and Experimental Verification of New MAP Kinase Docking Sites and Substrates Including Gli Transcription Factors

Ryan W. Benz, David T. Ho, Robyn M. Kaake, 2010, PLoS Comput. Biol..