Alessandro Pandini

发表

Conformational coupling by trans-phosphorylation in calcium calmodulin dependent kinase II

Alessandro Pandini, Howard Schulman, Shahid Khan, 2019, PLoS Comput. Biol..

Predicting the accuracy of protein–ligand docking on homology models

Alessandro Pandini, Annalisa Bordogna, Laura Bonati, 2011, J. Comput. Chem..

BioPySDS: an Object-Oriented Interface to Manage Protein Dynamics in an Evolutionary Framework

Giancarlo Mauri, Alessandro Pandini, Laura Bonati, 2004 .

Ligand-induced perturbation of the HIF-2α:ARNT dimer dynamics

Alessandro Pandini, Laura Bonati, Stefano Motta, 2018, PLoS Comput. Biol..

Deep Autoencoders for Additional Insight into Protein Dynamics

Alessandro Pandini, Maria-Iuliana Bocicor, Gabriela Serban Czibula, 2018, ICANN.

Functional annotation of protein conformations by Self-Organizing Maps

Fabio Stella, Alessandro Pandini, Laura Bonati, 2012, ECCB 2012.

MinSet: a general approach to derive maximally representative database subsets by using fragment dictionaries and its application to the SCOP database

Alessandro Pandini, Franca Fraternali, Laura Bonati, 2007, Bioinform..

Gsatools: Analysis of Allosteric Communication and Functional Local Motions using a Structural Alphabet

Alessandro Pandini, Franca Fraternali, Arianna Fornili, 2014 .

Additional file 3

Fabio Stella, Alessandro Pandini, Laura Bonati, 2011 .

In silico identification of rescue sites by double force scanning

Alessandro Pandini, Matteo Tiberti, Franca Fraternali, 2017, Bioinform..

A new methodology for the comparison of protein dynamics based on self-organizing maps

Fabio Stella, Alessandro Pandini, Laura Bonati, 2011 .

Structural alphabets derived from attractors in conformational space

Alessandro Pandini, Arianna Fornili, Jens Kleinjung, 2010, BMC Bioinformatics.

Additional file 6

Fabio Stella, Alessandro Pandini, Debra L. Fulton, 2009 .

GSATools: analysis of allosteric communication and functional local motions using a structural alphabet

Alessandro Pandini, Franca Fraternali, Arianna Fornili, 2013, Bioinform..

Conformational and functional analysis of molecular dynamics trajectories by Self-Organising Maps

Fabio Stella, Alessandro Pandini, Laura Bonati, 2011, BMC Bioinformatics.

Functional interpretation of protein conformational ensembles using self-organizing maps and network components

Fabio Stella, Alessandro Pandini, Laura Bonati, 2013 .

Ligand binding and activation of the Ah receptor.

Alessandro Pandini, Laura Bonati, A. Pandini, 2002, Chemico-biological interactions.

Detection of Allosteric Signal Transmission by Information-Theoretic Analysis of Protein Dynamics

Alessandro Pandini, Franca Fraternali, Arianna Fornili, 2012 .

Artificial neural networks for efficient clustering of conformational ensembles and their potential for medicinal chemistry.

Alessandro Pandini, Laura Bonati, Domenico Fraccalvieri, 2013, Current topics in medicinal chemistry.

Detection of the TCDD binding-fingerprint within the Ah receptor ligand binding domain by structurally driven mutagenesis and functional analysis.

Alessandro Pandini, Jing Zhao, Laura Bonati, 2009, Biochemistry.

Structural and functional characterization of the aryl hydrocarbon receptor ligand binding domain by homology modeling and mutational analysis.

Alessandro Pandini, Laura Bonati, A. Pandini, 2007, Biochemistry.

Giancarlo Mauri, Alessandro Pandini, Annalisa Bordogna, 2007, Protein engineering, design & selection : PEDS.

Bridging topological and functional information in protein interaction networks by short loops profiling

Alessandro Pandini, Sun Sook Chung, Franca Fraternali, 2015, Scientific Reports.

The Gearbox of the Bacterial Flagellar Motor Switch

Alessandro Pandini, Faruck Morcos, F. Morcos, 2016, Structure.

Using Local States To Drive the Sampling of Global Conformations in Proteins

Alessandro Pandini, Arianna Fornili, A. Pandini, 2016, Journal of chemical theory and computation.

Functional annotation of the mesophilic-like character of mutants in a cold-adapted enzyme by self-organising map analysis of their molecular dynamics.

Alessandro Pandini, Matteo Tiberti, Elena Papaleo, 2012, Molecular bioSystems.

Using Computational Intelligence Models for Additional Insight into Protein Structure

Alessandro Pandini, Gabriela Czibula, Mihai Teletin, 2017 .