Karen E Nelson

发表

OMeta: an ontology-based, data-driven metadata tracking system

Indresh Singh, Mehmet Kuscuoglu, Derek M Harkins, 2019, BMC Bioinformatics.

Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species.

David A Rasko, Jacques Ravel, Samuel V. Angiuoli, 2004, Nucleic acids research.

The future of microbial genomics.

Karen E Nelson, K. Nelson, 2003, Environmental microbiology.

A novel family of carbohydrate‐binding modules identified with Ruminococcus albus proteins

Raphael Lamed, Qi Xu, Edward A Bayer, 2004, FEBS letters.

Molecular analysis of the diversity of vaginal microbiota associated with bacterial vaginosis

Fang Liu, Karen E Nelson, Zongxin Ling, 2010, BMC Genomics.

On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales

Olga Zhaxybayeva, Pascal Lapierre, Derek M Bickhart, 2009, Proceedings of the National Academy of Sciences.

An in vitro biofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome

Shibu Yooseph, Xuesong He, Anna Edlund, 2013, Microbiome.

Bacterial translocation and changes in the intestinal microbiome in mouse models of liver disease.

Derrick E Fouts, Karen E Nelson, Manolito Torralba, 2012, Journal of hepatology.

Major Structural Differences and Novel Potential Virulence Mechanisms from the Genomes of Multiple Campylobacter Species

David A Rasko, Jacques Ravel, Michael C Schatz, 2005, PLoS biology.

Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism

Shibu Yooseph, Pieter C Dorrestein, Xuesong He, 2015, The ISME Journal.

Quantification of the relative roles of niche and neutral processes in structuring gastrointestinal microbiomes

Nicholas Chia, Fang Yang, Nigel Goldenfeld, 2012, Proceedings of the National Academy of Sciences.

Strain-specific genomic regions of Ruminococcus flavefaciens FD-1 as revealed by combinatorial random-phase genome sequencing and suppressive subtractive hybridization.

Karen E Nelson, Bryan A White, K. Nelson, 2004, Environmental microbiology.

The genome structure of Pseudomonas putida: high-resolution mapping and microarray analysis.

Christian Weinel, Frank Diehl, Burkhard Tümmler, 2002, Environmental microbiology.

Molecular analysis of the bacterial microbiota in the human stomach.

Elisabeth M Bik, Martin J Blaser, Guillermo Perez-Perez, 2006, Proceedings of the National Academy of Sciences of the United States of America.

Microbial metagenomics

Karen E Nelson, Emmanuel F Mongodin, Joanne B Emerson, 2005, Genome Biology.

The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium

Ingeborg Holt, Fan Yang, Jonathan A Eisen, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Integrated next-generation sequencing of 16S rDNA and metaproteomics differentiate the healthy urine microbiome from asymptomatic bacteriuria in neuropathic bladder associated with spinal cord injury

Inger Ljungberg, Rembert Pieper, Derrick E Fouts, 2012, Journal of Translational Medicine.

Gut Microbiome of Coexisting BaAka Pygmies and Bantu Reflects Gradients of Traditional Subsistence Patterns.

Ran Blekhman, Klara Vlckova, Karen E Nelson, 2016, Cell reports.