Andrew J. Bordner

发表

Predicting protein-protein binding sites in membrane proteins

Andrew J. Bordner, A. Bordner, 2009, BMC Bioinformatics.

Orientation-dependent backbone-only residue pair scoring functions for fixed backbone protein design

Andrew J. Bordner, 2009, BMC Bioinformatics.

Efficient molecular mechanics simulations of the folding, orientation, and assembly of peptides in lipid bilayers using an implicit atomic solvation model

Ruben Abagyan, Andrew J. Bordner, Barry Zorman, 2011, J. Comput. Aided Mol. Des..

MultiRTA: A simple yet reliable method for predicting peptide binding affinities for multiple class II MHC allotypes

Hans D. Mittelmann, Andrew J. Bordner, H. Mittelmann, 2010, BMC Bioinformatics.

Boundary element solution of the linear Poisson–Boltzmann equation and a multipole method for the rapid calculation of forces on macromolecules in solution

Andrew J. Bordner, G. A. Huber, G. Huber, 2003, J. Comput. Chem..

Predicting small ligand binding sites in proteins using backbone structure

Andrew J. Bordner, A. Bordner, 2008, Bioinform..

Computational challenges for modeling and simulating biomacromolecular assemblies

Andrey Gorin, Philip F. LoCascio, Andrew J. Bordner, 2006 .

Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces

Andrew J. Bordner, Andrey A. Gorin, A. Gorin, 2008, BMC Bioinformatics.

REVCOM: a robust Bayesian method for evolutionary rate estimation

Ruben Abagyan, Andrew J. Bordner, R. Abagyan, 2005, Bioinform..

Predicting the effects of amino acid replacements in peptide hormones on their binding affinities for class B GPCRs and application to the design of secretin receptor antagonists

Andrew J. Bordner, Laurence J. Miller, Jerez A. Te, 2012, Journal of Computer-Aided Molecular Design.

Kernelling Method for Identifying Near-Native Protein Decoy Structures

Xiuping Tao, Andrew J. Bordner, Thomas C. Schulthess, 2010, BIOCOMP.

Prediction of the binding affinities of peptides to class II MHC using a regularized thermodynamic model

Hans D. Mittelmann, Andrew J. Bordner, H. Mittelmann, 2010, BMC Bioinformatics.