Ting Chen

发表

DACE: a scalable DP‐means algorithm for clustering extremely large sequence data

Ning Chen, Yichao Dong, Linhao Jiang, 2016, Bioinform..

TACO: Taxonomic prediction of unknown OTUs through OTU co-abundance networks

Ting Chen, Zohreh Baharvand Irannia, Ting Chen, 2016, Quantitative Biology.

Integrative approaches for predicting protein function and prioritizing genes for complex phenotypes using protein interaction networks

Ting Chen, Fengzhu Sun, Xiaotu Ma, 2014, Briefings Bioinform..

Computational Methods for Predicting DomainDomain Interactions

Ting Chen, Fengzhu Sun, Hyunju Lee, 2010 .

Mapping gene ontology to proteins based on protein-protein interaction data

Ting Chen, Minghua Deng, Fengzhu Sun, 2004, Bioinform..

Simultaneous inference of phenotype-associated genes and relevant tissues from GWAS data via Bayesian integration of multiple tissue-specific gene networks

Rui Jiang, Wing Hung Wong, Ting Chen, 2017, Journal of molecular cell biology.

An integrative approach for causal gene identification and gene regulatory pathway inference

Li Wang, Ting Chen, Fengzhu Sun, 2006, ISMB.

Extending aggressive low-k1 design rule requirements for 90 and 65 nm nodes via simultaneous optimization of numerical aperture, illumination and optical proximity correction

Stephen Hsu, Robert John Socha, Ting Chen, 2005 .

An Integrated Probabilistic Model for Functional Prediction of Proteins

Ting Chen, Minghua Deng, Fengzhu Sun, 2004, J. Comput. Biol..

Computational studies of directed assembly and self assembly of building blocks and precise structures: From colloids to viruses.

Ting Chen, 2006 .

Assessment of the reliability of protein-protein interactions and protein function prediction

Ting Chen, Minghua Deng, Fengzhu Sun, 2002, Pacific Symposium on Biocomputing.

Inference of missing SNPs and information quantity measurements for haplotype blocks

C.-C. Jay Kuo, Ting Chen, Shih-Chieh Su, 2005, Bioinform..

Searching for interpretable rules for disease mutations: a simulated annealing bump hunting strategy

Hua Yang, Rui Jiang, Ting Chen, 2006, BMC Bioinformatics.

Prediction of protein function using protein-protein interaction data

Kui Zhang, Ting Chen, Minghua Deng, 2002, Proceedings. IEEE Computer Society Bioinformatics Conference.

Research on classification method of spare parts inventory based on warranty data

Jie Chen, Ting Chen, 2016, 2016 IEEE International Conference on Service Operations and Logistics, and Informatics (SOLI).

Integrating embeddings of multiple gene networks to prioritize complex disease-associated genes

Yijia Zhang, Rui Jiang, Ting Chen, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

An integrated probabilistic model for functional prediction of proteins

Ting Chen, Minghua Deng, Fengzhu Sun, 2003, RECOMB '03.

Study on Ventilation Effectiveness of Circular Column Attached Displacement Ventilation Mode

Angui Li, Ting Chen, Rui Wu, 2017 .

Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data

Kui Zhang, Ting Chen, Fengzhu Sun, 2003, RECOMB '03.

Network-based method to infer the contributions of proteins to the etiology of drug side effects

Rui Li, Ting Chen, Shao Li, 2015, Quantitative Biology.

Tree Height Estimation of Forest Plantation in Mountainous Terrain from Bare-Earth Points Using a DoG-Coupled Radial Basis Function Neural Network

Ting Chen, Penggen Cheng, Haiqing He, 2019, Remote. Sens..

Leveraging multiple gene networks to prioritize GWAS candidate genes via network representation learning.

Hairong Lv, Rui Jiang, Ting Chen, 2018, Methods.

Patient outcome prediction via convolutional neural networks based on multi-granularity medical concept embedding

Ning Chen, Haibo Wang, Hu Chen, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Study on Evaluation for Crowd Degree of Traffic Flow at Urban Tunnel Access Based on Acceleration Noise

Li Lin, Ting Chen, Cong Jiang, 2017 .

Investigating a lithography strategy for diagonal routing architecture at sub-100nm technology nodes

Song Li, Ting Chen, Ketan Joshi, 2005, SPIE Advanced Lithography.

COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO‐alignment and paired‐end read LinkAge

Ting Chen, Fengzhu Sun, Jed A. Fuhrman, 2016, Bioinform..

Elastic restricted Boltzmann machines for cancer data analysis

Zhongjun Zhou, Chen Zhang, Muxuan Liang, 2017, Quantitative Biology.

Hapblock: Haplotype Block Partitioning and Tag Snp Selection Software Using a Set of Dynamic Programming Algorithms

Kui Zhang, Ting Chen, Zhaohui S. Qin, 2022 .

DeepEnhancer: Predicting enhancers by convolutional neural networks

Ning Chen, Xu Min, Rui Jiang, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data

Kui Zhang, Ting Chen, Zhaohui S. Qin, 2002, Computational Methods for SNPs and Haplotype Inference.

Global inference of disease-causing single nucleotide variants from exome sequencing data

Rui Jiang, Ting Chen, Mengmeng Wu, 2016, BMC Bioinformatics.

Diffusion kernel-based logistic regression models for protein function prediction.

Ting Chen, Minghua Deng, Fengzhu Sun, 2006, Omics : a journal of integrative biology.

Constructing a Boolean implication network to study the interactions between environmental factors and OTUs

Rui Jiang, Ting Chen, Congmin Zhu, 2014, Quantitative Biology.

Single nucleotide polymorphism data analysis - State-of-the-art review on this emerging field from a signal processing viewpoint

Ting Chen, C.-C. Jay Kuo, Shih-Chieh Su, 2007, IEEE Signal Processing Magazine.

Predicting enhancers with deep convolutional neural networks

Ning Chen, Xu Min, Rui Jiang, 2017, BMC Bioinformatics.

Groupwise analysis of neuroimaging data

Baba C. Vemuri, Ting Chen, 2011 .

An Integer Programming Approach for the Selection of Tag SNPs Using Multi-allelic LD

Ting Chen, Yang-Ho Chen, Ting Chen, 2009, Commun. Inf. Syst..

Bayesian Models and Gibbs Sampling Strategies for Local Graph Alignment and Motif Identification in Stochastic Biological Networks

Rui Jiang, Ting Chen, Fengzhu Sun, 2009, Commun. Inf. Syst..

A direct design method of controllers based on the frequency response indices for servo systems: A direct design method of controllers based on the frequency response indices for servo systems

Yu Yao, Kemao Ma, Ting Chen, 2018 .

Instability of large-scale prototype Francis turbines of Three Gorges power station at part load

Ting Chen, Shengcai Li, Yuning Zhang, 2016 .

An integrated approach to the prediction of domain-domain interactions

Ting Chen, Minghua Deng, Fengzhu Sun, 2006, BMC Bioinformatics.

Chromatin accessibility prediction via convolutional long short-term memory networks with k-mer embedding

Ning Chen, Xu Min, Rui Jiang, 2017, Bioinform..

Chromatin accessibility prediction via convolutional long short-term memory networks with k-mer embedding

Ning Chen, Ting Chen, Wanwen Zeng, 2017, Bioinform..

PyroHMMsnp: an SNP caller for Ion Torrent and 454 sequencing data

Ting Chen, Feng Zeng, Rui Jiang, 2013, Nucleic acids research.

Prioritizing functional modules mediating genetic perturbations and their phenotypic effects: a global strategy

Ting Chen, Fengzhu Sun, Li Wang, 2008, Genome Biology.

Modeling RNA degradation for RNA-Seq with applications.

Ting Chen, Fengzhu Sun, Xiting Yan, 2012, Biostatistics.

Sequence-based prioritization of nonsynonymous single-nucleotide polymorphisms for the study of disease mutations.

C.-C. Jay Kuo, C-C Jay Kuo, Ting Chen, 2007, American journal of human genetics.

A Set of Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection via Haplotype Data or Genotype Data

Ting Chen, Fengzhu Sun, Michael S. Waterman, 2003 .

Haplotype block partition with limited resources and applications to human chromosome 21 haplotype data.

Ting Chen, Fengzhu Sun, Michael S Waterman, 2003, American journal of human genetics.

Accurate Genome Relative Abundance Estimation Based on Shotgun Metagenomic Reads

Li C. Xia, Ting Chen, Fengzhu Sun, 2011, PloS one.

Haplotype block partitioning and tag SNP selection using genotype data and their applications to association studies.

Ting Chen, Zhaohui S. Qin, Fengzhu Sun, 2004, Genome research.

Comparison of Metatranscriptomic Samples Based on k-Tuple Frequencies

Ying Wang, Ting Chen, Fengzhu Sun, 2014, PloS one.

Reconstructing cell cycle pseudo time-series via single-cell transcriptome data

Rui Jiang, Michael Q. Zhang, Ting Chen, 2017, Nature Communications.