Marco A. Marra

发表

De novo transcriptome assembly with ABySS

Inanç Birol, Steven J. M. Jones, Shaun D. Jackman, 2009, Bioinform..

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data

Sohrab P. Shah, Ali Bashashati, Ryan D. Morin, 2012, Bioinform..

BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data

Steven J. M. Jones, John N. Weinstein, Richard K. Wilson, 2012, Bioinform..

Feature-based classifiers for somatic mutation detection in tumour–normal paired sequencing data

Gholamreza Haffari, Anne Condon, Sohrab P. Shah, 2011, Bioinform..

Automated ordering of fingerprinted clones

Jacqueline E. Schein, Marco A. Marra, Martin Krzywinski, 2004, Bioinform..

LaneRuler: Automated Lane Tracking for DNA Electrophoresis Gel Images

Inanç Birol, Steven J. M. Jones, Jacqueline E. Schein, 2010, IEEE Transactions on Automation Science and Engineering.

Hive plots - rational approach to visualizing networks

Inanç Birol, Steven J. M. Jones, Marco A. Marra, 2012, Briefings Bioinform..

Genomic analysis of a rare human tumor

Inanç Birol, Obi L. Griffith, Steven J. M. Jones, 2010, BMC Bioinformatics.

Assembly of fingerprint contigs: parallelized FPC

Steven J. M. Jones, Marco A. Marra, Martin Krzywinski, 2002, Bioinform..

deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data

Süleyman Cenk Sahinalp, Malachi Griffith, Sohrab P. Shah, 2011, PLoS Comput. Biol..

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors

Kevin P. Murphy, Sohrab P. Shah, Ryan D. Morin, 2010, Bioinform..

Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data

Marco A. Marra, Hong Qian, Giulia C. Kennedy, 2007, BMC Bioinformatics.

Cancer genome-sequencing study design

Marco A. Marra, M. Marra, J. Mwenifumbo, 2013, Nature Reviews Genetics.

Whole-genome DNA and RNA sequencing in patients with metastatic colorectal cancer (mCRC).

Stephen Yip, Marco A. Marra, Janessa Laskin, 2014 .

ADAR1 promotes malignant progenitor reprogramming in chronic myeloid leukemia

Jessica M. Rusert, Marco A. Marra, Kelly A. Frazer, 2012, Proceedings of the National Academy of Sciences.

Second-Generation Sequencing for Cancer Genome Analysis

Marco A. Marra, Martin Krzywinski, Samuel Aparicio, 2014 .

Personalized Oncogenomics: Clinical Experience with Malignant Peritoneal Mesothelioma Using Whole Genome Sequencing

Steven J. M. Jones, Stephen Yip, Marco A. Marra, 2015, PloS one.

The whole-genome landscape of medulloblastoma subtypes

Roland Eils, Steven J. M. Jones, Sebastian M. Waszak, 2017, Nature.

The Genome Sequence of the SARS-Associated Coronavirus

Obi L. Griffith, Jacqueline E. Schein, Marco A. Marra, 2003, Science.

Massively Parallel Sequencing

Marco A. Marra, M. Marra, J. Friedman, 2011, Encyclopedia of Autism Spectrum Disorders.

A SAGE Approach to Discovery of Genes Involved in Autophagic Cell Death

Steven J. M. Jones, Marco A. Marra, Scott D. Zuyderduyn, 2003, Current Biology.

Epigenetic and transcriptional determinants of the human breast

Malachi Griffith, Michael T. McManus, Martin Hirst, 2015, Nature Communications.

Comparative Tumor RNA Sequencing Analysis for Difficult-to-Treat Pediatric and Young Adult Patients With Cancer

David Haussler, Jingchun Zhu, Katrina Learned, 2019, JAMA network open.

Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

Thomas Zeng, Richard Varhol, Martin Hirst, 2008, Nucleic acids research.

Genes that may modulate longevity in C. elegans in both dauer larvae and long-lived daf-2 adults

Peter Ruzanov, Marco A. Marra, Sheldon J. McKay, 2007, Experimental Gerontology.

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context

Clement Adebamowo, Ritika Kundra, Steven J. M. Jones, 2018, Cell reports.

MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers

Steven J. M. Jones, Sohrab P. Shah, Joseph M. Connors, 2011, Nature.

The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse

René L. Warren, Fiona S. L. Brinkman, Ryan D. Morin, 2006, Proceedings of the National Academy of Sciences.

DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape

Keith L. Ligon, Martin Hirst, Marco A. Marra, 2013, Nature Genetics.

Generation and annotation of the DNA sequences of human chromosomes 2 and 4

Terrence S. Furey, Sean R. Eddy, Li Ding, 2005, Nature.

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data

Sohrab P. Shah, Ali Bashashati, Marco A. Marra, 2014, Genome research.

Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution

Sohrab P. Shah, Ali Bashashati, Hui Xue, 2014, Nature.

The genetic landscape of high-risk neuroblastoma

Steven J. M. Jones, Adam Kiezun, Shaun D. Jackman, 2013, Nature Genetics.

Divergent clonal selection dominates medulloblastoma at recurrence

Gary D. Bader, Steven J. M. Jones, Gary D Bader, 2016, Nature.

Erratum: Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles (Cell Reports (2017) 18(11) (2780–2794) (S2211124717302140) (10.1016/j.celrep.2017.02.033))

Steven J. M. Jones, Chris Sander, Li Ding, 2017 .

Aberrant patterns of H3K4 and H3K27 histone lysine methylation occur across subgroups in medulloblastoma

Steven J. M. Jones, Stefan M. Pfister, Paul A. Northcott, 2013, Acta Neuropathologica.

Erratum: The somatic genomic landscape of glioblastoma (Cell (2013) 155 (462-477))

Chris Sander, David Haussler, Wei Zhang, 2014 .

Lessons learned from the application of whole-genome analysis to the treatment of patients with advanced cancers

Steven J. M. Jones, Stephen Yip, Marco A. Marra, 2015, Cold Spring Harbor molecular case studies.

Sequence biases in large scale gene expression profiling data

Obi L. Griffith, Marco A. Marra, Asim S. Siddiqui, 2006, Nucleic acids research.

Medulloblastoma-associated DDX3 variant selectively alters the translational response to stress

Jennifer A. Doudna, Volker Hovestadt, Stefan M. Pfister, 2016, Oncotarget.