Federico Fogolari

发表

Bluues server: electrostatic properties of wild-type and mutated protein structures

Silvio C. E. Tosatto, Giovanni Minervini, Ian Walsh, 2012, Bioinform..

Exploring Protein Fragment Assembly Using CLP

Alessandro Dal Palù, Agostino Dovier, Enrico Pontelli, 2011, IJCAI.

Chapter 3:Protein Structure Analysis with Constraint Programming

Alessandro Dal Palù, Agostino Dovier, Enrico Pontelli, 2012 .

Bluues: a program for the analysis of the electrostatic properties of proteins based on generalized Born radii

Alessandra Corazza, Gennaro Esposito, Federico Fogolari, 2012, BMC Bioinformatics.

Accurate Estimation of the Entropy of Rotation-Translation Probability Distributions.

Alessandra Corazza, Federico Fogolari, Cedrix Jurgal Dongmo Foumthuim, 2016, Journal of chemical theory and computation.

Amino acid empirical contact energy definitions for fold recognition in the space of contact maps

Federico Fogolari, Marco Berrera, Henriette Molinari, 2003, BMC Bioinformatics.

Agent-based protein structure prediction

Agostino Dovier, Luca Bortolussi, Federico Fogolari, 2007, Multiagent Grid Syst..

Chiara Romualdi, Federico Fogolari, Fabrizio Serra, 2016, J. Comput. Biol..

Using Secondary Structure Information for Protein Folding in CLP(FD)

Agostino Dovier, Federico Fogolari, Matteo Burato, 2002, Electron. Notes Theor. Comput. Sci..

Protein Aggregation Measurement through Electrical

Federico Fogolari, A. Affanni, Gennaro Esposito, 2013 .

CLP-based protein fragment assembly* pdf

Alessandro Dal Palù, Agostino Dovier, Enrico Pontelli, 2010, Theory and Practice of Logic Programming.

Accuracy assessment of the linear Poisson–Boltzmann equation and reparametrization of the OBC generalized Born model for nucleic acids and nucleic acid–protein complexes

Alessandra Corazza, Gennaro Esposito, Federico Fogolari, 2015, J. Comput. Chem..

PDB2ENTROPY and PDB2TRENT: Conformational and Translational-Rotational Entropy from Molecular Ensembles

Alessandra Corazza, Gennaro Esposito, Federico Fogolari, 2018, J. Chem. Inf. Model..

A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators

Silvio C. E. Tosatto, Giorgio Colombo, Federico Fogolari, 2005, BMC Bioinformatics.

Constraint Logic Programming approach to protein structure prediction

Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, 2004, BMC Bioinformatics.

Protein Folding Simulation in Concurrent Constraint Programming

Alessandro Dal Palù, Agostino Dovier, Luca Bortolussi, 2004 .

Molecular mechanics and dynamics of biomolecules using a solvent continuum model

Gennaro Esposito, Federico Fogolari, Paolo Viglino, 2001, J. Comput. Chem..

Fast structure similarity searches among protein models: efficient clustering of protein fragments

Alessandra Corazza, Gennaro Esposito, Federico Fogolari, 2011, Algorithms for Molecular Biology.

Protein Folding in CLP(FD) with Empirical Contact Energies

Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, 2003, CSCLP.

Protein Folding Simulation in CCP

Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, 2004, ICLP.

Generalized Born radii computation using linear models and neural networks

Giuseppe Serra, Gennaro Esposito, Federico Fogolari, 2020, Bioinform..

Optimal Relabeling of Water Molecules and Single-Molecule Entropy Estimation

Gennaro Esposito, Federico Fogolari, F. Fogolari, 2021, Biophysica.

Peptide models of folding initiation sites of bovine beta-lactoglobulin: identification of nativelike hydrophobic interactions involving G and H strands.

Federico Fogolari, Renato Longhi, Henriette Molinari, 2002, Biochemistry.

Probing the influence of citrate-capped gold nanoparticles on an amyloidogenic protein.

Alessandra Corazza, Gennaro Esposito, Federico Fogolari, 2015, ACS nano.

MM/PBSA analysis of molecular dynamics simulations of bovine β‐lactoglobulin: Free energy gradients in conformational transitions?

Elisabetta Moroni, Federico Fogolari, Maciej Baginski, 2005, Proteins.

Molecular dynamics simulation of β2‐microglobulin in denaturing and stabilizing conditions

Alessandra Corazza, Gennaro Esposito, Federico Fogolari, 2011, Proteins.

Protocol for MM/PBSA molecular dynamics simulations of proteins.

Federico Fogolari, Alessandro Brigo, Henriette Molinari, 2003, Biophysical journal.

Molecular Dynamics Simulation Suggests Possible Interaction Patterns at Early Steps of β2-Microglobulin Aggregation

Pietro Faccioli, Alessandra Corazza, Gennaro Esposito, 2007 .

Comparative molecular dynamics simulations of HIV‐1 integrase and the T66I/M154I mutant: Binding modes and drug resistance to a diketo acid inhibitor

Federico Fogolari, Alessandro Brigo, J. Briggs, 2005, Proteins.

Electrostatic properties of bovine β‐lactoglobulin

Federico Fogolari, Henriette Molinari, H. Molinari, 2000 .

On the variational approach to Poisson–Boltzmann free energies

Federico Fogolari, J. Briggs, F. Fogolari, 1997 .

Automation of peak-tracking analysis of stepwise perturbed NMR spectra

Andrea Fusiello, Alessandra Corazza, Gennaro Esposito, 2017, Journal of biomolecular NMR.