Alex L. Mitchell

发表

Learning to extract relations for protein annotation

Terri K. Attwood, Melanie Hilario, Jee-Hyub Kim, 2007, ISMB/ECCB.

PRECIS: an automated pipeline for producing concise reports about proteins

Carole A. Goble, Terri K. Attwood, Phillip W. Lord, 2001, Proceedings 2nd Annual IEEE International Symposium on Bioinformatics and Bioengineering (BIBE 2001).

Challenges for protein family annotation

Teresa K. Attwood, Alex L. Mitchell, I. Selimas, 2006 .

Residue data and intrinsic disorder: extending InterPro functionality to improve protein sequence annotation

Neil D. Rawlings, Robert D. Finn, Lorna Richardson, 2017 .

InterPro in 2017—beyond protein family and domain annotations

Silvio C. E. Tosatto, Neil D. Rawlings, Huaiyu Mi, 2016, Nucleic Acids Res..

PRINTS and PRINTS-S shed light on protein ancestry

Terri K. Attwood, Darren R. Flower, Anna Gaulton, 2002, Nucleic Acids Res..

EBI metagenomics in 2016 - an expanding and evolving resource for the analysis and archiving of metagenomic data

Robert D. Finn, Matthew Fraser, Guy Cochrane, 2015, Nucleic Acids Res..

Metagenomic analysis: the challenge of the data bonanza

Alex L. Mitchell, Philip Jones, Sarah Hunter, 2012, Briefings Bioinform..

EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies

Robert D. Finn, Gustavo A. Salazar, Guy Cochrane, 2017, Nucleic Acids Res..

InterPro: the integrative protein signature database

Robert D. Finn, Cathy H. Wu, Alex Bateman, 2008, Nucleic Acids Res..

EBI’s Metagenomics Pipeline: Moving towards cloud computing

Robert D. Finn, Alex L. Mitchell, Simon C. Potter, 2016 .

MINOTAUR: A Web-Based Annotator-Assistant Tool

Teresa K. Attwood, Alex L. Mitchell, I. Selimas, 2011 .

BioMinT: a database curator's assistant for biomedical text processing

Melanie Hilario, J-H Kim, Johann Petrak, 2004, ISMB 2004.

Slim-o-matic: a Semi-Automated Way to Generate Gene Ontology Slims

Robert D. Finn, Laura I. Furlong, Helen E. Parkinson, 2016, SWAT4LS.

The Evolution of Protein Family Databases

Teresa K. Attwood, Alex L. Mitchell, T. Attwood, 2019, Encyclopedia of Bioinformatics and Computational Biology.

InterPro, progress and status in 2005

Cathy H. Wu, Alex Bateman, Rolf Apweiler, 2004, Nucleic Acids Res..

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains

Sameer Velankar, James Smith, Daniel W. A. Buchan, 2012, Nucleic Acids Res..

New developments in the InterPro database

Robert D. Finn, Robert Petryszak, Cathy H. Wu, 2007, Nucleic Acids Res..

PRECIS: An automated pipeline for producing concise protein reports.

Carole Goble, Phillip Lord, Teresa K. Attwood, 2001 .

EBI metagenomics—a new resource for the analysis and archiving of metagenomic data

Matthew Fraser, Guy Cochrane, Susanna-Assunta Sansone, 2013, Nucleic Acids Res..

The PRINTS protein fingerprint database: functional and evolutionary applications

Teresa K. Attwood, Alex L. Mitchell, Neil Maudling, 2004 .

Unifying the known and unknown microbial coding sequence space

Renzo Kottmann, Robert D. Finn, Frank Oliver Glöckner, 2020, bioRxiv.

The InterPro protein families database: the classification resource after 15 years

Huaiyu Mi, Robert D. Finn, Matthew Fraser, 2014, Nucleic Acids Res..

Toward More Intelligent Annotation Tools: A Prototype

Carole A. Goble, Terri K. Attwood, Alex L. Mitchell, 2001, IEEE Intell. Syst..

On the way to research objects for environmental genomics (or metagenomics)

Robert D. Finn, Alex L. Mitchell, Folker Meyer, 2018, RO.

PRECIS: Protein reports engineered from concise information in SWISS-PROT

Terri K. Attwood, Alex L. Mitchell, Jacqueline Renée Reich, 2003, Bioinform..

Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation

Prudence Mutowo-Meullenet, Nicola J. Mulder, Elizabeth Kelly, 2012, Database J. Biol. Databases Curation.

HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes

Nitin Kumar, Robert D. Finn, Alex L. Mitchell, 2015, Nucleic Acids Res..

METIS: multiple extraction techniques for informative sentences

Terri K. Attwood, Melanie Hilario, Jee-Hyub Kim, 2005, Bioinform..

Classifying Protein Fingerprints

Terri K. Attwood, Melanie Hilario, Jee-Hyub Kim, 2004, PKDD.

The PRINTS database: a fine-grained protein sequence annotation and analysis resource—its status in 2012

Terri K. Attwood, Athanasia Pavlopoulou, Alex L. Mitchell, 2012, Database J. Biol. Databases Curation.

The Pfam protein families database: towards a more sustainable future

Robert D. Finn, Sean R. Eddy, Marco Punta, 2015, Nucleic Acids Res..

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

Silvio C. E. Tosatto, Neil D. Rawlings, Robert D. Finn, 2018, Nucleic Acids Res..

PRINTS and its automatic supplement, prePRINTS

Terri K. Attwood, Darren R. Flower, Anna Gaulton, 2003, Nucleic Acids Res..

InterProScan 5: genome-scale protein function classification

Matthew Fraser, Alex L. Mitchell, Hamish McWilliam, 2014, Bioinform..

InterPro in 2011: new developments in the family and domain prediction database

Robert D. Finn, Matthew Fraser, Cathy H. Wu, 2011, Nucleic acids research.

A new genomic blueprint of the human gut microbiota

Robert D. Finn, Gregory B. Gloor, Alex L. Mitchell, 2019, Nature.

MGnify: the microbiome analysis resource in 2020

Robert D. Finn, Guy Cochrane, Alex L. Mitchell, 2019, Nucleic Acids Res..

GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations

Robert D. Finn, Alex L. Mitchell, Amaia Sangrador-Vegas, 2016, Database J. Biol. Databases Curation.

ELIXIR Pilot: Marine metagenomics

Robert D. Finn, Alex L. Mitchell, Espen Mikal Robertsen, 2016 .