Matthew H. Brush

发表

Architecting Attribution: expanding the scope of academic credit

Kristi L. Holmes, Nicole A. Vasilevsky, Marijane White, 2019, RO.

Building a Molecular Glyco-phenotype Ontology to Decipher Undiagnosed Diseases

Melissa Haendel, Matthew H. Brush, Jean-Philippe Gourdine, 2016, ICBO/BioCreative.

The Resource Identification Initiative: A cultural shift in publishing

David N. Kennedy, Jeffrey S. Grethe, Maryann E. Martone, 2015, Neuroinformatics.

Developing a Reagent Application Ontology within the OBO Foundry Framework

Carlo Torniai, Melissa Haendel, Matthew H. Brush, 2011, ICBO.

On the reproducibility of science: unique identification of research resources in the biomedical literature

Nicole A. Vasilevsky, Matthew H. Brush, Melissa A. Haendel, 2013, PeerJ.

Developing an Application Ontology for Biomedical Resource Annotation and Retrieval: Challenges and Lessons Learned

Carlo Torniai, Melissa Haendel, Matthew H. Brush, 2011, ICBO.

Expanding the Molecular Glycophenotype Ontology to include model organisms and acquired diseases

Melissa Haendel, Matthew H. Brush, Jean-Philippe Gourdine, 2018, ICBO.

SEPIO: A Semantic Model for the Integration and Analysis of Scientific Evidence

Melissa Haendel, Matthew H. Brush, Kent Shefchek, 2016, ICBO/BioCreative.

Tailoring the NCI Thesaurus for Use in The OBO Library

Laura Christopherson, Chris Mungall, James P. Balhoff, 2017, ICBO.

The Ontology for Biomedical Investigations

Jessica A. Turner, Chris F. Taylor, Mathias Brochhausen, 2016, PloS one.

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

Alan Ruttenberg, Alexander D. Diehl, Judith A. Blake, 2016, J. Biomed. Semant..

CLO: The cell line ontology

Yue Liu, David J. States, Yu Lin, 2014, Journal of Biomedical Semantics.

Alignment of Cultured Cell Modeling Across OBO Foundry Ontologies: Key Outcomes, Insights

Alexander D. Diehl, Melissa Haendel, Yongqun He, 2013, ICBO.

What's in a Genotype?: An Ontological Characterization for Integration of Genetic Variation Data

Chris Mungall, Melissa Haendel, Nicole L. Washington, 2013, ICBO.

Research resources: curating the new eagle-i discovery system

David Robinson, Carlo Torniai, Melissa Haendel, 2012, Database J. Biol. Databases Curation.

Enhancing SciENcv through Semantic Research Profile Integration with the VIVO-ISF Ontology

Robin Champieux, Melissa Haendel, David Eichmann, 2016, ICBO/BioCreative.

Abstract 1096: Harmonization standards from the Variant Interpretation for Cancer Consortium

Subha Madhavan, Deborah I. Ritter, Angshumoy Roy, 2020 .

Supporting Database Annotations and Beyond with the Evidence & Conclusion Ontology (ECO)

Marcus C. Chibucos, Michelle G. Giglio, Matthew H. Brush, 2016, ICBO/BioCreative.

The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species

Tudor Groza, Harry Hochheiser, Damian Smedley, 2016, bioRxiv.

The Resource Identification Initiative: A cultural shift in publishing

Matthew H. Brush, Jeffery S. Grethe, Sean L. Hill, 2015, F1000Research.

The Monarch Initiative: Insights across species reveal human disease mechanisms

Julius O. B. Jacobsen, Matthew H. Brush, Charles D. Borromeo, 2016 .

Disease insights through cross-species phenotype comparisons

Julius O. B. Jacobsen, Matthew H. Brush, S. Lewis, 2015, Mammalian Genome.

Growth Arrest and DNA Damage-Inducible Protein GADD34 Targets Protein Phosphatase 1α to the Endoplasmic Reticulum and Promotes Dephosphorylation of the α Subunit of Eukaryotic Translation Initiation Factor 2

Matthew H. Brush, S. Shenolikar, Douglas C. Weiser, 2003, Molecular and Cellular Biology.

PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models.

Steven B. Neuhauser, Yvonne A. Evrard, Matthew H. Brush, 2017, Cancer research.

Navigating the phenotype frontier: The Monarch Initiative

Julius O. B. Jacobsen, Matthew H. Brush, S. Lewis, 2016, bioRxiv.

Akt and 14-3-3 control a PACS-2 homeostatic switch that integrates membrane traffic with TRAIL-induced apoptosis.

Matthew H. Brush, H. Fu, H. Shu, 2009, Molecular cell.

The GA4GH Variation Representation Specification (VRS): a Computational Framework for the Precise Representation and Federated Identification of Molecular Variation

Alex H. Wagner, Matthew H. Brush, Andrew D. Yates, 2021, bioRxiv.

ROCK1 Phosphorylates and Activates Zipper-interacting Protein Kinase*

Matthew H. Brush, T. Haystead, D. Loiselle, 2007, Journal of Biological Chemistry.

Association with Endoplasmic Reticulum Promotes Proteasomal Degradation of GADD34 Protein*

Matthew H. Brush, S. Shenolikar, W. Zhou, 2011, The Journal of Biological Chemistry.

Characteristics of undiagnosed diseases network applicants: implications for referring providers

Matthew H. Brush, Sarah E. Gould, Jean M. Davidson, 2018, BMC Health Services Research.

Magnetic Resonance Imaging characteristics in case of TOR1AIP1 muscular dystrophy.

Matthew H. Brush, Mercedes E. Alejandro, Gabriel F. Batzli, 2019, Clinical imaging.

A window into living with an undiagnosed disease: illness narratives from the Undiagnosed Diseases Network

Matthew H. Brush, Trevor S. Frisby, Sarah E. Gould, 2017, Orphanet Journal of Rare Diseases.

Deactylase Inhibitors Disrupt Cellular Complexes Containing Protein Phosphatases and Deacetylases*

Matthew H. Brush, S. Shenolikar, T. Yao, 2004, Journal of Biological Chemistry.

Phosphorylation of PDZ1 Domain Attenuates NHERF-1 Binding to Cellular Targets*

Matthew H. Brush, S. Shenolikar, E. Weinman, 2007, Journal of Biological Chemistry.

Disease insights through cross-species phenotype comparisons

Julius O. B. Jacobsen, Matthew H. Brush, Peter N. Robinson, 2015, Mammalian Genome.

Original article Research resources: curating the new eagle-i discovery system y

Matthew H. Brush, C. Torniai, M. Haendel, 2012 .

Identification of cellular protein phosphatase-1 regulators.

Matthew H. Brush, S. Shenolikar, D. W. Roadcap, 2007, Methods in molecular biology.

Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery

Jean-Philippe F Gourdine, Matthew H Brush, Nicole A Vasilevsky, 2019, Database J. Biol. Databases Curation.

Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science

Matthew H. Brush, P. Clemons, C. Mungall, 2022, Clinical and translational science.

Chronic oxidative stress promotes GADD34-mediated phosphorylation of the TAR DNA-binding protein TDP-43, a modification linked to neurodegeneration

Matthew H. Brush, S. Shenolikar, P. Yusoff, 2017, The Journal of Biological Chemistry.

The GA4GH Variation Representation Specification: A computational framework for variation representation and federated identification

Matthew H. Brush, Andrew D. Yates, David A. Kreda, 2021, Cell genomics.

GA4GH: International policies and standards for data sharing across genomic research and healthcare

Grant M. Wood, James A. Eddy, Julius O. B. Jacobsen, 2021, Cell genomics.

Partial Loss of USP9X Function Leads to a Male Neurodevelopmental and Behavioral Disorder Converging on Transforming Growth Factor β Signaling.

Matthew H. Brush, David R. Murdock, Jean M. Davidson, 2019, Biological psychiatry.

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

Tudor Groza, Damian Smedley, Simon Jupp, 2019, Nucleic Acids Res..

A Comprehensive Iterative Approach is Highly Effective in Diagnosing Individuals who are Exome Negative

Matthew H. Brush, Sarah E. Gould, Jean M. Davidson, 2018, Genetics in Medicine.

Biallelic Mutations in ATP5F1D, which Encodes a Subunit of ATP Synthase, Cause a Metabolic Disorder

Matthew H. Brush, Sarah E. Gould, Jean M. Davidson, 2018, American journal of human genetics.

Navigating the Phenotype Frontier: The Monarch Initiative

Tudor Groza, Harry Hochheiser, Damian Smedley, 2016, Genetics.

Control of Cellular GADD34 Levels by the 26S Proteasome

Matthew H. Brush, S. Shenolikar, 2008, Molecular and Cellular Biology.

Control of Cellular GADD 34 Levels by the 26 S Proteasome ! †

Matthew H. Brush, S. Shenolikar, 2008 .

Shirish Eukaryotic Translation Initiation Factor 2 Subunit of α Dephosphorylation of the Reticulum and Promotes to the Endoplasmic α Phosphatase 1 Protein GADD 34 Targets Protein Growth Arrest and DNA Damage-Inducible

Matthew H. Brush, Douglas C. Weiser, Shenolikar, 2003 .

The Resource Identification Initiative: A cultural shift in publishing

Maryann E Martone, Matthew H. Brush, Anita Bandrowski, 2015, The Journal of comparative neurology.

A Simple Standard for Sharing Ontological Mappings (SSSOM) pdf

Christopher G Chute, Simon Jupp, Tania Tudorache, 2021, Database J. Biol. Databases Curation.

OpenVIVO: Transparency in Scholarship

Martin Szomszor, Muhammad Javed, David Eichmann, 2018, Front. Res. Metr. Anal..

The Data Use Ontology to streamline responsible access to human biomedical datasets

Matthew H. Brush, J. D. Spalding, Rebecca R. Boyles, 2021, Cell genomics.

Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions

Matthew H Brush, Narayani Barve, David Plotkin, 2019, Biodiversity data journal.

The Resource Identification Initiative: a cultural shift in publishing

Maryann E Martone, Melissa A Haendel, Matthew H. Brush, 2015, Brain and behavior.

Protein Serine/Threonine Phosphatase Inhibitors and Human Disease

Matthew H. Brush, S. Shenolikar, 2010 .

Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network

James Geller, Yehoshua Perl, Samson W. Tu, 2015, J. Biomed. Informatics.

ClinGen advancing genomic data‐sharing standards as a GA4GH driver project

Melissa Haendel, Matthew H. Brush, Aleksandar Milosavljevic, 2018, Human mutation.

Standardization of assay representation in the Ontology for Biomedical Investigations

Mathias Brochhausen, Richard H Scheuermann, Gully Burns, 2021, Database J. Biol. Databases Curation.

Association with Endoplasmic Reticulum Promotes Proteasomal Degradation of GADD34 Protein*

Matthew H. Brush, S. Shenolikar, W. Zhou, 2011, The Journal of Biological Chemistry.

The Mouseion at the JAXlibrary The Mouseion at the JAXlibrary

Xingmin Aaron Zhang, Matthew H. Brush, N. Vasilevsky, 2022 .

Research resources: curating the new eagle-i discovery system

Matthew H. Brush, C. Torniai, M. Haendel, 2012, Database J. Biol. Databases Curation.

Rothamsted Repository Download

Zoe May Pendlington, Julius O. B. Jacobsen, Matthew H. Brush, 2022 .

The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species

Julius O. B. Jacobsen, Matthew H. Brush, Charles D. Borromeo, 2016, bioRxiv.

De Novo Variants in WDR37 Are Associated with Epilepsy, Colobomas, Dysmorphism, Developmental Delay, Intellectual Disability, and Cerebellar Hypoplasia.

Matthew H. Brush, Gabor T. Marth, John Arul Phillips, 2019, American journal of human genetics.

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

Matthew H. Brush, Yvonne M. Bradford, Ceri E. Van Slyke, 2016, Journal of Biomedical Semantics.

Chronic oxidative stress promotes GADD34-mediated phosphorylation of the TAR DNA-binding protein TDP-43, a modification linked to neurodegeneration

Matthew H. Brush, S. Shenolikar, P. Yusoff, 2017, The Journal of Biological Chemistry.