Minghua Deng

发表

On Design of Oligonucleotide SNP Arrays and Methods for Genotype Calling

Ming Li, Minping Qian, Lin Wan, 2008, 2008 International Conference on BioMedical Engineering and Informatics.

Design and Implementation of Intelligent Agricultural Product Logistics Vehicle Monitoring Terminal based on GPS/GPRS

Minghua Deng, Xiaozhi Wang, Xiaozhi Wang, 2015 .

Prediction of Protein Functions from Protein-Protein Interaction Data Based on a New Measure of Network Betweenness

Minping Qian, Lin Wang, Minghua Deng, 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering.

Mapping gene ontology to proteins based on protein-protein interaction data

Ting Chen, Minghua Deng, Fengzhu Sun, 2004, Bioinform..

Alignment-Free Sequence Comparison Based on Next Generation Sequencing Reads: Extended Abstract

Kai Song, Jie Ren, Minghua Deng, 2012, RECOMB.

An Efficient Algorithm for Deciphering Regulatory Motifs

Minping Qian, Minghua Deng, Fengzhu Sun, 2007 .

An Integrated Probabilistic Model for Functional Prediction of Proteins

Ting Chen, Minghua Deng, Fengzhu Sun, 2004, J. Comput. Biol..

Predicting kinase functional sites using hierarchical stochastic language modelling

Minping Qian, Xiangzhong Fang, Luhua Lai, 2010 .

Assessment of the reliability of protein-protein interactions and protein function prediction

Ting Chen, Minghua Deng, Fengzhu Sun, 2002, Pacific Symposium on Biocomputing.

Reverse Engineering of Gene Regulation Networks with an Application to the DREAM4 in silico Network Challenge

Hongyu Zhao, Minghua Deng, Hyonho Chun, 2011, Handbook of Statistical Bioinformatics.

Modular analysis of the probabilistic genetic interaction network

Lin Wang, Dong Li, Minping Qian, 2011, Bioinform..

The Biases of Copy Numbers from Affymetrix SNP Arrays and Their Corrections

Minping Qian, Minghua Deng, Yi Xiao, 2010, Commun. Inf. Syst..

REMAS: a new regression model to identify alternative splicing events from exon array data

Minping Qian, Ji Zhu, Hao Zheng, 2009, BMC Bioinformatics.

Kernel-Based Data Fusion and Its Application to Protein Function Prediction in Yeast

Nello Cristianini, Michael I. Jordan, William Stafford Noble, 2003, Pacific Symposium on Biocomputing.

Prediction of protein function using protein-protein interaction data

Kui Zhang, Ting Chen, Minghua Deng, 2002, Proceedings. IEEE Computer Society Bioinformatics Conference.

Feature-Based Causal Structure Discovery in Protein and Gene Expression Data with Bayesian Network

Minping Qian, Minghua Deng, Jingwei Liu, 2009, 2009 Fifth International Conference on Natural Computation.

Segmentation of connected image based on phase locking

Minping Qian, Minghua Deng, 1996 .

Compositional data network analysis via lasso penalized D-trace loss

Shun He, Minghua Deng, Huili Yuan, 2019, Bioinform..

Pathway Detection Based on Hierarchical LASSO Regression Model

Minping Qian, Ji Zhu, Hao Zheng, 2009, 2009 2nd International Conference on Biomedical Engineering and Informatics.

A Lasso regression model for the construction of microRNA-target regulatory networks

Minghua Deng, Yang Zhou, Chenggang Zhang, 2011, Bioinform..

CCLasso: correlation inference for compositional data through Lasso

Hongyu Zhao, Minghua Deng, Chengcheng Huang, 2015, Bioinform..

A Method to Correct Systematic Bias in Affymetrix SNP Arrays

Minping Qian, Lin Wan, Wenjiang J. Fu, 2008, 2008 International Conference on BioMedical Engineering and Informatics.

An integrated probabilistic model for functional prediction of proteins

Ting Chen, Minghua Deng, Fengzhu Sun, 2003, RECOMB '03.

Using a Stochastic AdaBoost Algorithm to Discover Interactome Motif Pairs from Sequences

Minping Qian, Huan Yu, Minghua Deng, 2006, ICIC.

A Framework to Incorporate D-trace Loss into Compositional Data Analysis

Shun He, Minghua Deng, Minghua Deng, 2018, bioRxiv.

Imputing missing values for genetic interaction data.

Minghua Deng, Dejie Yang, Yishu Wang, 2014, Methods.

Combinatorial regulation of transcription factors and microRNAs

Minping Qian, Minghua Deng, Naifang Su, 2010, BMC Systems Biology.

VCNet: vector‐based gene co‐expression network construction and its application to RNA‐seq data

Minghua Deng, Nelson L. S. Tang, Huaying Fang, 2017, Bioinform..

RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning

Sheng Wang, Jinbo Xu, Minghua Deng, 2018, BMC Bioinformatics.

New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing

Kai Song, Gesine Reinert, Jie Ren, 2014, Briefings Bioinform..

A Novel Algorithm for Handwritten Chinese Character Recognition

Feng Qi, Minping Qian, Minghua Deng, 2000, ICMI.

Searching for bidirectional promoters in Arabidopsis thaliana

Quan Wang, Minping Qian, Dayong Li, 2009, BMC Bioinformatics.

Nonequilibrium Model for Yeast Cell Cycle

Yuping Zhang, Minping Qian, Huan Yu, 2006, ICIC.

Binding Energy Landscape Analysis Helps to Discriminate True Hits from High-Scoring Decoys in Virtual Screening

Luhua Lai, Hao Zheng, Minghua Deng, 2010, J. Chem. Inf. Model..

A Robust Empirical Bayesian Method for Detecting Differentially Expressed Genes

Minping Qian, Lin Hou, Fugui Wang, 2009, 2009 2nd International Conference on Biomedical Engineering and Informatics.

Pysim-sv: a package for simulating structural variation data with GC-biases

Yun Liu, Ruibin Xi, Minghua Deng, 2017, BMC Bioinformatics.

scRMD: Imputation for single cell RNA-seq data via robust matrix decomposition

Ruibin Xi, Chong Chen, Minghua Deng, 2018, bioRxiv.

Estimation of isoform expression in RNA-seq data using a hierarchical Bayesian model

Jun Wang, Minghua Deng, Changjing Wu, 2015, J. Bioinform. Comput. Biol..

Integrating multiple types of data to predict novel cell cycle-related genes

Lin Wang, Minping Qian, Lin Hou, 2011, BMC Systems Biology.

Diffusion kernel-based logistic regression models for protein function prediction.

Ting Chen, Minghua Deng, Fengzhu Sun, 2006, Omics : a journal of integrative biology.

Detecting virus integration sites based on multiple related sequencing data by VirTect

Ruibin Xi, Yun Liu, Minghua Deng, 2018, BMC Medical Genomics.

An Improvement for Eulerian Path of Assembly

Minping Qian, Minghua Deng, Shenglan Peng, 2004, SNPD.

Inference of Markovian properties of molecular sequences from NGS data and applications to comparative genomics

Kai Song, Gesine Reinert, Jie Ren, 2015, Bioinform..

A network based covariance test for detecting multivariate eQTL in saccharomyces cerevisiae

Minghua Deng, Nelson L. S. Tang, Zhenye Li, 2016, BMC Systems Biology.

Multiple alignment-free sequence comparison

Kai Song, Gesine Reinert, Jie Ren, 2013, Bioinform..

The Implementation and Application of the Microarray Preprocessing Generalized PDNN Model

Minping Qian, Wei Wei, Lin Wan, 2009, 2009 2nd International Conference on Biomedical Engineering and Informatics.

Direct interaction network and differential network inference from compositional data via lasso penalized D-trace loss

Minghua Deng, Shun He, 2019, PloS one.

SVmine improves structural variation detection by integrative mining of predictions from multiple algorithms

Yun Liu, Ruibin Xi, Minghua Deng, 2017, Bioinform..

Alignment-Free Sequence Comparison Based on Next-Generation Sequencing Reads

Kai Song, Jie Ren, Minghua Deng, 2013, J. Comput. Biol..

An integrated approach to the prediction of domain-domain interactions

Ting Chen, Minghua Deng, Fengzhu Sun, 2006, BMC Bioinformatics.

CIMON: Towards High-quality Hash Codes

Chong Chen, Jianqiang Huang, Minghua Deng, 2021, IJCAI.

Nonlinear cooperation of p53-ING1-induced bax expression and protein S-nitrosylation in GSNO-induced thymocyte apoptosis: a quantitative approach with cross-platform validation

Minping Qian, Wenjiang J. Fu, Minghua Deng, 2009, Apoptosis.

Integrating Phosphorylation Network with Transcriptional Network Reveals Novel Functional Relationships

Minping Qian, Lin Hou, Minghua Deng, 2012, PloS one.

Low-Rank and Sparse Matrix Decomposition for Genetic Interaction Data

Minghua Deng, Yishu Wang, Minghua Deng, 2015, BioMed research international.

Understanding Protein-Protein Interactions: From Domain Level to Motif Level

Minghua Deng, Minghua Deng, Huang Yu, 2007 .

A Survey on Deep Hashing Methods pdf

Hao Zhang, Chong Chen, Jianqiang Huang, 2020, ArXiv.

Hybridization and amplification rate correction for affymetrix SNP arrays

Minping Qian, Minghua Deng, Peichao Peng, 2012, BMC Medical Genomics.

Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix.

Shuai Cheng Li, Dongbo Bu, Minghua Deng, 2016, Biochemical and biophysical research communications.

Stochastic model of yeast cell-cycle network

Minping Qian, Minghua Deng, Chao Tang, 2006, q-bio/0605011.

Real-value and confidence prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning

Jinbo Xu, Minghua Deng, Sheng Wang, 2017 .

Cell Culture System for Analysis of Genetic Heterogeneity Within Hepatocellular Carcinomas and Response to Pharmacologic Agents.

Ruibin Xi, Minghua Deng, Jia Fan, 2017, Gastroenterology.

Predicting MicroRNA targets by integrating sequence and expression data in cancer

Minping Qian, Minghua Deng, Naifang Su, 2011, 2011 IEEE International Conference on Systems Biology (ISB).

International Workshop on Applications of Probability and Statistics to Biology, July 11–13, 2019

Jianfeng Feng, Lin Wan, Minghua Deng, 2019, Quantitative Biology.

Conservation and implications of eukaryote transcriptional regulatory regions across multiple species

Minping Qian, Wenjiang J. Fu, Minghua Deng, 2008, BMC Genomics.

Inferring the progression of multifocal liver cancer from spatial and temporal genomic heterogeneity

Ruibin Xi, Minghua Deng, Jia Fan, 2015, Oncotarget.

Data integration for the study of protein interactions

Minghua Deng, Fengzhu Sun, Hyunju Lee, 2009 .

Differential network analysis via lasso penalized D-trace loss

Ruibin Xi, Minghua Deng, Minghua Deng, 2015, 1511.09188.

Adjustment method for microarray data generated using two-cycle RNA labeling protocol

Minping Qian, Minghua Deng, Shunong Bai, 2013, BMC Genomics.

Insights into the transmission of respiratory infectious diseases through empirical human contact networks

Shuai Cheng Li, Dongbo Bu, Yang Zhou, 2016, Scientific Reports.

Graphical model selection with latent variables

Hongyu Zhao, Minghua Deng, Huaying Fang, 2017 .

Statistical Analysis Reveals Co-Expression Patterns of Many Pairs of Genes in Yeast Are Jointly Regulated by Interacting Loci

Hongyu Zhao, Minghua Deng, Wei Zheng, 2013, PLoS genetics.

Comparison of metagenomic samples using sequence signatures

Minghua Deng, Fengzhu Sun, Xuegong Zhang, 2012, BMC Genomics.

Integrative Approaches for microRNA Target Prediction: Combining Sequence Information and the Paired mRNA and miRNA Expression Profiles

Minping Qian, Minghua Deng, Naifang Su, 2013 .

A study of biases of DNA copy number estimation based on PICR model

Minping Qian, Quan Wang, Minghua Deng, 2011 .