Brian P. Walenz

Prediction of Self-Assembly of Energetic Tiles and Dominos: Experiments, Mathematics and Software

Alan J. Hurd, Sorin Istrail, Serafim Batzoglou, 2000 .

Integrating Hi-C links with assembly graphs for chromosome-scale assembly

Sergey Koren, Adam M. Phillippy, Jay Ghurye, 2019, PLoS Comput. Biol..

Rhesus Macaque Genome Sequencing and Analysis Rhesus Macaque Genome Evolutionary and Biomedical Insights from the

Christian J. Buhay, Granger G. Sutton, Yan Ding, 2010 .

An improved genome assembly uncovers prolific tandem repeats in Atlantic cod

Kjetill S. Jakobsen, James R. Knight, Sigbjørn Lien, 2016 .

Hybrid assembly with long and short reads improves discovery of gene family expansions

Michael C. Schatz, Namrata Singh, Peter Tiffin, 2017, BMC Genomics.

The Genome of Anopheles darlingi, the main neotropical malaria vector

Francisco Prosdocimi, Jesus Aparecido Ferro, Brenton R. Graveley, 2013, Nucleic acids research.

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

Sergey Koren, Adam M. Phillippy, Konstantin Berlin, 2016, bioRxiv.

Towards complete and error-free genome assemblies of all vertebrate species

Sergey Koren, Adam M. Phillippy, Eugene W. Myers, 2020, Nature.

Complete assembly of parental haplotypes with trio binning

Sergey Koren, Alexander T. Dilthey, Adam M. Phillippy, 2018, bioRxiv.