Sheng-You Huang

发表

ITScorePro: an efficient scoring program for evaluating the energy scores of protein structures for structure prediction.

Xiaoqin Zou, Sheng-You Huang, X. Zou, 2014, Methods in molecular biology.

RRDB: a comprehensive and non‐redundant benchmark for RNA‐RNA docking and scoring

Sheng-You Huang, Yumeng Yan, Shengyou Huang, 2018, Bioinform..

Inclusion of Solvation and Entropy in the Knowledge-Based Scoring Function for Protein-Ligand Interactions

Xiaoqin Zou, Sheng-You Huang, X. Zou, 2010, J. Chem. Inf. Model..

Construction and Test of Ligand Decoy Sets Using MDock: Community Structure-Activity Resource Benchmarks for Binding Mode Prediction

Xiaoqin Zou, Sheng-You Huang, X. Zou, 2011, J. Chem. Inf. Model..

Inclusion of the orientational entropic effect and low‐resolution experimental information for protein–protein docking in Critical Assessment of PRedicted Interactions (CAPRI)

Chengfei Yan, Xiaoqin Zou, Sheng-You Huang, 2013, Proteins.

Scoring functions and their evaluation methods for protein-ligand docking: recent advances and future directions.

Xiaoqin Zou, Sheng-You Huang, Sam Z Grinter, 2010, Physical chemistry chemical physics : PCCP.

HPEPDOCK: a web server for blind peptide–protein docking based on a hierarchical algorithm

Hao Li, Sheng-You Huang, Bowen Jin, 2018, Nucleic Acids Res..

HSYMDOCK: a docking web server for predicting the structure of protein homo-oligomers with Cn or Dn symmetry

Sheng-You Huang, Yumeng Yan, Huanyu Tao, 2018, Nucleic Acids Res..

PepBDB: a comprehensive structural database of biological peptide-protein interactions

Zeyu Wen, Jiahua He, Sheng-You Huang, 2018, Bioinform..

Comprehensive assessment of flexible‐ligand docking algorithms: current effectiveness and challenges

Sheng-You Huang, Shengyou Huang, 2018, Briefings Bioinform..

Exploring the potential of global protein-protein docking: an overview and critical assessment of current programs for automatic ab initio docking.

Sheng-You Huang, Shengyou Huang, 2015, Drug discovery today.

Protein-Protein Docking with Improved Shape Complementarity

Sheng-You Huang, Yumeng Yan, 2018, ICIC.

An iterative knowledge‐based scoring function for protein–protein recognition

Xiaoqin Zou, Sheng-You Huang, X. Zou, 2008, Proteins.

HybridDock: A Hybrid Protein-Ligand Docking Protocol Integrating Protein- and Ligand-Based Approaches

Yi Pan, Jianxin Wang, Min Li, 2016, J. Chem. Inf. Model..

Community-wide assessment of protein-interface modeling suggests improvements to design methodology.

Kengo Kinoshita, Haruki Nakamura, Genki Terashi, 2011, Journal of molecular biology.

Accurate prediction of residue-residue contacts across homo-oligomeric protein interfaces through deep leaning

Sheng-You Huang, Yumeng Yan, Shengyou Huang, 2020, bioRxiv.

Efficient conformational ensemble generation of protein-bound peptides

Di Zhang, Sheng-You Huang, Yumeng Yan, 2017, Journal of Cheminformatics.

Full-length de novo protein structure determination from cryo-EM maps using deep learning

Sheng-You Huang, Jiahua He, 2020 .

Scoring and Lessons Learned with the CSAR Benchmark Using an Improved Iterative Knowledge-Based Scoring Function

Xiaoqin Zou, Sheng-You Huang, X. Zou, 2011, J. Chem. Inf. Model..

A nonredundant structure dataset for benchmarking protein‐RNA computational docking

Xiaoqin Zou, Sheng-You Huang, X. Zou, 2013, J. Comput. Chem..

A non-redundant benchmark for symmetric protein docking

Sheng-You Huang, Yumeng Yan, Shengyou Huang, 2019, Big Data Min. Anal..

Automated Large-Scale File Preparation, Docking, and Scoring: Evaluation of ITScore and STScore Using the 2012 Community Structure-Activity Resource Benchmark

Chengfei Yan, Xiaoqin Zou, Lin Jiang, 2013, J. Chem. Inf. Model..

An iterative knowledge‐based scoring function to predict protein–ligand interactions: II. Validation of the scoring function

Xiaoqin Zou, Sheng-You Huang, X. Zou, 2006, J. Comput. Chem..

HDOCK: a web server for protein–protein and protein–DNA/RNA docking based on a hybrid strategy

Pei Zhou, Di Zhang, Sheng-You Huang, 2017, Nucleic Acids Res..

Search strategies and evaluation in protein-protein docking: principles, advances and challenges.

Sheng-You Huang, Shengyou Huang, 2014, Drug discovery today.

NLDock: a Fast Nucleic Acid-Ligand Docking Algorithm for Modeling RNA/DNA-Ligand Complexes

Sheng-You Huang, Yuyu Feng, Qilong Wu, 2021, J. Chem. Inf. Model..

Full-length de novo protein structure determination from cryo-EM maps using deep learning

Sheng-You Huang, Jiahua He, Shengyou Huang, 2021, Bioinform..

Network-induced nonequilibrium phase transition in the "game of Life".

Sheng-You Huang, Xian-Wu Zou, Shengyou Huang, 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.

How the “Folding Funnel” Depends on Size and Structure of Proteins？A View from the Scoring Function Perspective

Sheng-You Huang, Gordon K. Springer, 2013 .

An inverse docking approach for identifying new potential anti-cancer targets.

Xiaoqin Zou, Sheng-You Huang, Sam Z Grinter, 2011, Journal of molecular graphics & modelling.

Directed random walks in continuous space.

Sheng-You Huang, Xian-Wu Zou, Zhun-Zhi Jin, 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.

Molecular modeling of the heterodimer of human CFTR's nucleotide-binding domains using a protein-protein docking approach.

Xiaoqin Zou, Sheng-You Huang, Tzyh-Chang Hwang, 2009, Journal of molecular graphics & modelling.

Efficient molecular docking of NMR structures: Application to HIV‐1 protease

Xiaoqin Zou, Sheng-You Huang, X. Zou, 2006, Protein science : a publication of the Protein Society.

Chapter 14 - Mean-Force Scoring Functions for Protein–Ligand Binding

Xiaoqin Zou, Sheng-You Huang, X. Zou, 2010 .

Random walk with memory enhancement and decay.

Sheng-You Huang, Wei Zhang, Xian-Wu Zou, 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.

Molecular Mechanism of Evolution and Human Infection with SARS-CoV-2

Jiahua He, Sheng-You Huang, Yi Xiao, 2020, Viruses.

Structure properties and synchronizability of cobweb-like networks

Sheng-You Huang, Xian-Wu Zou, Shengyou Huang, 2008 .

Particle-cluster aggregation on a small-world network.

Sheng-You Huang, Zhi-Gang Shao, Xian-Wu Zou, 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.

Advances and Challenges in Protein-Ligand Docking

Xiaoqin Zou, Sheng-You Huang, X. Zou, 2010, International journal of molecular sciences.

A knowledge-based scoring function for protein-RNA interactions derived from a statistical mechanics-based iterative method

Xiaoqin Zou, Sheng-You Huang, X. Zou, 2014, Nucleic acids research.

Critical behavior of efficiency dynamics in small-world networks.

Sheng-You Huang, Zhi-Gang Shao, Xian-Wu Zou, 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.

Addressing recent docking challenges: A hybrid strategy to integrate template‐based and free protein‐protein docking

Zeyu Wen, Sheng-You Huang, Xinxiang Wang, 2017, Proteins.

MDockPP: A hierarchical approach for protein‐protein docking and its application to CAPRI rounds 15–19

Xiaoqin Zou, Sheng-You Huang, X. Zou, 2010, Proteins.