Nicholas Roehner

发表

Synthetic Biology Open Language (SBOL) Version 2.2.0

Zhen Zhang, Chris J. Myers, Jacob Beal, 2018, J. Integr. Bioinform..

Directed acyclic graph-based technology mapping of genetic circuit models.

Chris J Myers, Nicholas Roehner, Nicholas Roehner, 2014, ACS synthetic biology.

Synthetic Biology Open Language (SBOL) Version 2.0.0.

Zhen Zhang, Chris J. Myers, Jacob Beal, 2015, Journal of integrative bioinformatics.

Capturing Multicellular System Designs Using Synthetic Biology Open Language (SBOL).

Jacob Beal, James Alastair McLaughlin, Bryan Bartley, 2020, ACS synthetic biology.

libSBOLj 2.0: A Java Library to Support SBOL 2.0

Zhen Zhang, Chris J. Myers, Jacob Beal, 2015, IEEE Life Sciences Letters.

Synthetic Biology Open Language (SBOL) Version 2.1.0

Zhen Zhang, Chris J. Myers, Jacob Beal, 2016, J. Integr. Bioinform..

Synthetic Biology Open Language (SBOL) Version 2.0.0

Zhen Zhang, Jacob Beal, Matthew R. Pocock, 2015, J. Integr. Bioinform..

A methodology to annotate systems biology markup language models with the synthetic biology open language.

Chris J Myers, Nicholas Roehner, Nicholas Roehner, 2014, ACS synthetic biology.

The synthetic biology open language.

Matthew R. Pocock, Goksel Misirli, Ernst Oberortner, 2015, Methods in molecular biology.

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0

Jacob Beal, Robert Sidney Cox, James McLaughlin, 2018, J. Integr. Bioinform..

Efficient analysis methods in synthetic biology.

Zhen Zhang, Chris Winstead, Curtis Madsen, 2015, Methods in molecular biology.

Title: Synthetic Biology Open Language (SBOL) Version 1.0.0

Allan Kuchinsky, Chris J. Myers, Jacob Beal, 2011 .

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1

Robert Sidney Cox, James McLaughlin, Bryan Bartley, 2019, J. Integr. Bioinform..

Synthetic biology open language (SBOL)

Jacob Beal, Bryan Bartley, Goksel Misirli, 2015 .

iBioSim 3: A Tool for Model-Based Genetic Circuit Design.

Zhen Zhang, Leandro H. Watanabe, Curtis Madsen, 2018, ACS synthetic biology.

Design and Test of Genetic Circuits Using ${\tt iBioSim}$iBioSim

Chris J. Myers, Chris Winstead, Curtis Madsen, 2012, IEEE Design & Test of Computers.

A Framework for Genetic Logic Synthesis

Prashant Vaidyanathan, Swapnil Bhatia, Douglas Densmore, 2015, Proceedings of the IEEE.

Double Dutch: A Tool for Designing Combinatorial Libraries of Biological Systems.

Nicholas Roehner, Douglas Densmore, Christopher A Voigt, 2016, ACS synthetic biology.

Generating Systems Biology Markup Language Models from the Synthetic Biology Open Language.

Zhen Zhang, Chris J Myers, Tramy Nguyen, 2015, ACS synthetic biology.

Stochastic Model Checking of Genetic Circuits

Zhen Zhang, Chris J. Myers, Chris Winstead, 2014, ACM J. Emerg. Technol. Comput. Syst..

The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology

Allan Kuchinsky, Jacob Beal, Drew Endy, 2014, Nature Biotechnology.

Technology mapping of genetic circuit designs

Nicholas Roehner, Nicholas Roehner, 2014 .

Proposed data model for the next version of the synthetic biology open language.

Jacob Beal, Matthew R. Pocock, Goksel Misirli, 2015, ACS synthetic biology.

Needs and opportunities in bio-design automation: four areas for focus.

Curtis Madsen, Nicholas Roehner, Douglas Densmore, 2017, Current opinion in chemical biology.

Synthetic Biology Open Language (SBOL) Version 2.1.0

Zhen Zhang, Jacob Beal, Matthew R. Pocock, 2012, Journal of integrative bioinformatics.

Utilizing stochastic model checking to analyze genetic circuits

Zhen Zhang, Chris J. Myers, Chris Winstead, 2012, 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB).

Specifying Combinatorial Designs with the Synthetic Biology Open Language (SBOL).

Jacob Beal, Bryan Bartley, Chris J Myers, 2019, ACS synthetic biology.

A Framework for Genetic Logic Synthesis In this paper, the authors introduce af ramework to address the challenges of applying logic synthesis techniques to genetic logic devices.

Prashant Vaidyanathan, Swapnil Bhatia, Douglas Densmore, 2015 .

Sharing Structure and Function in Biological Design with SBOL 2.0.

Zhen Zhang, Jacob Beal, Matthew R. Pocock, 2016, ACS synthetic biology.

Capturing Multicellular System Designs Using the Synthetic Biology Open Language (SBOL)

Jacob Beal, James Alastair McLaughlin, Goksel Misirli, 2018 .

A Converter from the Systems Biology Markup Language to the Synthetic Biology Open Language.

Chris J Myers, Tramy Nguyen, Nicholas Roehner, 2016, ACS synthetic biology.

Synthetic Biology Open Language (SBOL) Version 2.3

Matthew R. Pocock, John H. Gennari, Robert Sidney Cox, 2019, J. Integr. Bioinform..

Verification of genetic engineering in yeasts with nanopore whole genome sequencing

Bryan Bartley, Aaron Adler, Nicholas Roehner, 2020, bioRxiv.

Synthetic biology open language visual (SBOL Visual) version 2.3

Jacob Beal, Matthew R. Pocock, Robert Sidney Cox, 2021, J. Integr. Bioinform..

Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration

Thomas E. Gorochowski, Robert Nicol, Tarjei S. Mikkelsen, 2016, Nucleic acids research.

Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration

Thomas E. Gorochowski, Robert Nicol, Tarjei S. Mikkelsen, 2016, Nucleic acids research.

The Synthetic Biology Open Language 2 . 0

Bryan Bartley, Nicholas Roehner, Jacob Beal Raytheon, 2015 .

Synthetic biology open language visual (SBOL visual) version 2.2

Jacob Beal, Matthew R. Pocock, Robert Sidney Cox, 2020, J. Integr. Bioinform..

Design Automation in Synthetic Biology.

Douglas Densmore, Curtis Madsen, Nicholas Roehner, 2017, Cold Spring Harbor perspectives in biology.