Piotr J. Balwierz

发表

A promoter-level mammalian expression atlas

Cesare Furlanello, Finn Drabløs, Carsten O. Daub, 2015 .

SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates

Mikhail Pachkov, Phil Arnold, Erik van Nimwegen, 2012, Nucleic Acids Res..

Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop

Stephen J. Elledge, Mikhail Pachkov, Erik van Nimwegen, 2012, Nature Medicine.

Parity induces differentiation and reduces Wnt/Notch signaling ratio and proliferation potential of basal stem/progenitor cells isolated from mouse mammary epithelium

Piotr J. Balwierz, E. van Nimwegen, H. Brinkhaus, 2013, Breast Cancer Research.

Sox4 is a master regulator of epithelial-mesenchymal transition by controlling Ezh2 expression and epigenetic reprogramming.

Piotr J. Balwierz, E. van Nimwegen, D. Schübeler, 2013, Cancer cell.

The Corepressor NCoR1 Antagonizes PGC-1α and Estrogen-Related Receptor α in the Regulation of Skeletal Muscle Function and Oxidative Metabolism

Piotr J. Balwierz, E. van Nimwegen, J. Auwerx, 2012, Molecular and Cellular Biology.

Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization

Juan M. Vaquerizas, Piotr J. Balwierz, B. Cairns, 2021, Developmental cell.

Germ plasm localisation dynamics mark distinct phases of transcriptional and post-transcriptional regulation control in primordial germ cells

Juan M. Vaquerizas, Piotr J. Balwierz, B. Cairns, 2020, bioRxiv.

Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data

Piotr J. Balwierz, E. van Nimwegen, J. Kawai, 2009, Genome Biology.

The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing.

Mihaela Zavolan, Jingyi Hui, Stefan Stamm, 2010, Human molecular genetics.

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

Martin S. Taylor, Denis C. Bauer, Andrew M. Waterhouse, 2009, Nature Genetics.

Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

Juan M. Vaquerizas, Anne E. Eagle, Piotr J. Balwierz, 2022, Nature genetics.

Integrated annotation and analysis of genomic features reveal new types of functional elements and large-scale epigenetic phenomena in the developing zebrafish

Juan M. Vaquerizas, Anne E. Eagle, Piotr J. Balwierz, 2021 .

Adipose Tissue MicroRNAs as Regulators of CCL2 Production in Human Obesity

Piotr J. Balwierz, E. van Nimwegen, Y. Hayashizaki, 2012, Diabetes.

ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs

Piotr J. Balwierz, E. van Nimwegen, M. Zavolan, 2014, Genome research.

Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing

Piotr J. Balwierz, Piero Carninci, A. Suzuki, 2020, Nature Communications.

The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations.

Piotr J. Balwierz, J. Kawai, Piero Carninci, 2014, Blood.

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

Martin S. Taylor, Denis C. Bauer, Ariel S. Schwartz, 2009, Nature Genetics.

Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting

Mikhail Pachkov, Phil Arnold, Michael B. Stadler, 2013, Genome research.

Amphioxus functional genomics and the origins of vertebrate gene regulation

Piotr J. Balwierz, M. Weirauch, P. Holland, 2018, Nature.

An epigenetic profile of early T‐cell development from multipotent progenitors to committed T‐cell descendants

Piotr J. Balwierz, Philipp Berninger, E. Nimwegen, 2014, European journal of immunology.

Transcription and enhancer profiling in human monocyte subsets.

Piotr J. Balwierz, Y. Hayashizaki, T. Lassmann, 2014, Blood.

Expression and Processing of a Small Nucleolar RNA from the Epstein-Barr Virus Genome

Piotr J. Balwierz, J. Mrázek, M. Zavolan, 2009, PLoS pathogens.

Inference of gene regulatory interactions from deep sequencing data

Piotr J. Balwierz, P. Balwierz, 2012 .

Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways

Piotr J. Balwierz, E. van Nimwegen, M. Zavolan, 2014, Nucleic acids research.

A promoter-level mammalian expression atlas

Martin S. Taylor, Jay W. Shin, Thomas J. Ha, 2014, Nature.

of regulatory motifs ISMARA : automated modeling of genomic signals as a democracy Material Supplemental

Piotr J. Balwierz, M. Zavolan, E. Nimwegen, 2014 .