Boris E Shakhnovich

Quantifying structure-function uncertainty: a graph theoretical exploration into the origins and limitations of protein annotation.

Boris E Shakhnovich, J Max Harvey, B. Shakhnovich, 2004, Journal of molecular biology.

Comparisons of predicted genetic modules: identification of co-expressed genes through module gene flow.

Joseph Mellor, Charles Delisi, Kevin Galinsky, 2004, Genome informatics. International Conference on Genome Informatics.

Defining functional distance using manifold embeddings of gene ontology annotations

Gilad Lerman, Boris E. Shakhnovich, Boris E Shakhnovich, 2007, Proceedings of the National Academy of Sciences.

Imprint of evolution on protein structures.

Guido Tiana, Eugene I Shakhnovich, Nikolay V Dokholyan, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Functional fingerprints of folds: evidence for correlated structure-function evolution.

Charles DeLisi, Eugene I Shakhnovich, Nikolay V Dokholyan, 2003, Journal of molecular biology.

Origins and impact of constraints in evolution of gene families.

Eugene V Koonin, Boris E. Shakhnovich, Boris E Shakhnovich, 2006, Genome research.

Positional clustering improves computational binding site detection and identifies novel cis -regulatory sites in mammalian GABA A receptor subunit genes.

Charles DeLisi, Timothy E Reddy, Timothy E. Reddy, 2007, Nucleic acids research.