Qike Li

发表

New Statistical Methods of Single-subject Transcriptome Analysis for Precision Medicine

Qike Li, Qike Li, 2017 .

Developing a ‘personalome’ for precision medicine: emerging methods that compute interpretable effect sizes from single-subject transcriptomes

Joanne Berghout, Qike Li, Francesca Vitali, 2017, Briefings Bioinform..

kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects

Yves A. Lussier, Haiquan Li, Joanne Berghout, 2017, J. Biomed. Informatics.

A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations

Yves A. Lussier, Jianrong Li, Haiquan Li, 2017, J. Am. Medical Informatics Assoc..

Analysis of aggregated cell–cell statistical distances within pathways unveils therapeutic-resistance mechanisms in circulating tumor cells

Yves A. Lussier, Haiquan Li, James L. Chen, 2016, Bioinform..

Single subject transcriptome analysis to identify functionally signed gene set or pathway activitya

Yves A. Lussier, Jianrong Li, Joanne Berghout, 2018, PSB.

Interpretation of 'Omics dynamics in a single subject using local estimates of dispersion between two transcriptomes

Yves A. Lussier, Joanne Berghout, Qike Li, 2019, AMIA.

A two-stage statistical procedure for feature selection and comparison in functional analysis of metagenomes

Lingling An, Qike Li, Ruofei Du, 2015, Bioinform..

Accurate genome relative abundance estimation for closely related species in a metagenomic sample

Lingling An, Qike Li, Michael B. Sohn, 2014, BMC Bioinformatics.

eQTL networks unveil enriched mRNA master integrators downstream of complex disease-associated SNPs

Yves A. Lussier, Jianrong Li, Haiquan Li, 2015, J. Biomed. Informatics.

Emergence of pathway-level composite biomarkers from converging gene set signals of heterogeneous transcriptomic responses

Yves A. Lussier, Qike Li, A. Grant Schissler, 2018, PSB.

Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival

Yves A. Lussier, Haiquan Li, Qike Li, 2015, Bioinform..

On Construction of the ASR-oriented Indian English Pronunciation Dictionary

Qike Li, Keliang Zhang, Xian Huang, 2020, LREC.

N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes

Yves A. Lussier, Haiquan Li, Joanne Berghout, 2017, BMC Medical Genomics.

iDEG: a single-subject method utilizing local estimates of dispersion to impute differential expression between two transcriptomes

Yves A. Lussier, Haiquan Li, Joanne Berghout, 2018, bioRxiv.