Mateusz Kurcinski

发表

Mechanism of Folding and Binding of an Intrinsically Disordered Protein As Revealed by ab Initio Simulations.

Mateusz Kurcinski, Andrzej Kolinski, Sebastian Kmiecik, 2014, Journal of chemical theory and computation.

Flexible docking of the fragment of the troponin I to the troponin C

Mateusz Kurcinski, Andrzej Kolinski, Jacek Wabik, 2014, IWBBIO.

Aggrescan3D standalone package for structure-based prediction of protein aggregation properties

Valentin Iglesias, Salvador Ventura, Mateusz Kurcinski, 2019, Bioinform..

COARSE-GRAINED MODELING OF PROTEIN STRUCTURE, DYNAMICS AND PROTEIN-PROTEIN INTERACTIONS

Mateusz Kurcinski, Andrzej Kolinski, Sebastian Kmiecik, 2014 .

Highly Flexible Protein-Peptide Docking Using CABS-Dock.

Mateusz Kurcinski, Andrzej Kolinski, Sebastian Kmiecik, 2016, Methods in molecular biology.

Modeling of protein-peptide interactions using the CABS-dock web server for binding site search and flexible docking.

Mateusz Kurcinski, Andrzej Kolinski, Sebastian Kmiecik, 2015, Methods.

Wieloskalowe modelowanie białek (Multiscale protein modeling)

Dominik Gront, Mateusz Kurcinski, Andrzej Kolinski, 2008 .

Protein Structure Prediction Using Coarse-Grained Models

Dominik Gront, Mateusz Kurcinski, Andrzej Kolinski, 2018, Springer Series on Bio- and Neurosystems.

CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site

Mateusz Kurcinski, Andrzej Kolinski, Sebastian Kmiecik, 2015, Nucleic Acids Res..

CABS-dock standalone: a toolbox for flexible protein–peptide docking

Mateusz Kurcinski, Andrzej Kolinski, Sebastian Kmiecik, 2019, Bioinform..

CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures

Mateusz Kurcinski, Andrzej Kolinski, Sebastian Kmiecik, 2018, Nucleic Acids Res..

Flexible docking of peptides to proteins using CABS‐dock

Mateusz Kurcinski, Andrzej Kolinski, Sebastian Kmiecik, 2020, Protein science : a publication of the Protein Society.

CABS-flex standalone: a simulation environment for fast modeling of protein flexibility

Mateusz Kurcinski, Andrzej Kolinski, Sebastian Kmiecik, 2018, Bioinform..

A protocol for CABS-dock protein–peptide docking driven by side-chain contact information

Mateusz Kurcinski, Andrzej Kolinski, Sebastian Kmiecik, 2017, BioMedical Engineering OnLine.

Clustering as a supporting tool for structural drug design.

Dominik Gront, Mateusz Kurcinski, Andrzej Kolinski, 2006, Acta poloniae pharmaceutica.

Protein–peptide docking using CABS-dock and contact information

Mateusz Kurcinski, Andrzej Kolinski, Sebastian Kmiecik, 2018, Briefings Bioinform..

Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility

Valentin Iglesias, Salvador Ventura, Mateusz Kurcinski, 2019, Nucleic Acids Res..

Steps towards flexible docking: Modeling of three-dimensional structures of the nuclear receptors bound with peptide ligands mimicking co-activators’ sequences

Mateusz Kurcinski, Andrzej Kolinski, A. Kolinski, 2007, The Journal of Steroid Biochemistry and Molecular Biology.

Modeling protein structure, dynamics and thermodynamics with reduced representation of conformational space

Dominik Gront, Mateusz Kurcinski, Andrzej Kolinski, 2006 .

Protein-peptide docking: opportunities and challenges.

Ora Schueler-Furman, Mateusz Kurcinski, Andrzej Kolinski, 2018, Drug discovery today.

Hierarchical modeling of protein interactions

Mateusz Kurcinski, Andrzej Kolinski, A. Kolinski, 2007, Journal of molecular modeling.

Coarse-Grained Modeling of Peptide Docking Associated with Large Conformation Transitions of the Binding Protein: Troponin I Fragment–Troponin C System

Mateusz Kurcinski, Andrzej Kolinski, Jacek Wabik, 2015, Molecules.

Modeling EphB4-EphrinB2 protein–protein interaction using flexible docking of a short linear motif

Mateusz Kurcinski, Andrzej Kolinski, Sebastian Kmiecik, 2017, BioMedical Engineering OnLine.

Theoretical study of molecular mechanism of binding TRAP220 coactivator to Retinoid X Receptor alpha, activated by 9-cis retinoic acid

Mateusz Kurcinski, Andrzej Kolinski, A. Kolinski, 2010, The Journal of Steroid Biochemistry and Molecular Biology.

Denatured proteins and early folding intermediates simulated in a reduced conformational space.

Dominik Gront, Mateusz Kurcinski, Andrzej Kolinski, 2005, Acta biochimica Polonica.