David Sankoff

David Sankoff, Chunfang Zheng, Victor A. Albert, 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Distinguishing successive ancient polyploidy levels based on genome-internal syntenic alignment

David Sankoff, Yue Zhang, Chunfang Zheng, 2019, BMC Bioinformatics.

Conserved Synteny As a Measure of Genomic Distance

David Sankoff, Joseph H. Nadeau, D. Sankoff, 1996, Discret. Appl. Math..

Tests for gene clustering

David Sankoff, Dannie Durand, D. Sankoff, 2002, RECOMB '02.

Fractionation statistics

David Sankoff, Chunfang Zheng, Baoyong Wang, 2011, BMC Bioinformatics.

Short inversions and conserved gene clusters

David Sankoff, D. Sankoff, 2002, SAC '02.

A strategy for sequence phylogeny research

David Sankoff, R. J. Cedergren, W. McKay, 1982, Nucleic Acids Res..

Poisson adjacency distributions in genome comparison: multichromosomal, circular, signed and unsigned cases

David Sankoff, Benoît Alain, Andrew Wei Xu, 2008, ECCB.

Genome rearrangement with gene families

David Sankoff, D. Sankoff, 1999, Bioinform..

Stability of Rearrangement Measures in the Comparison of Genome Sequences

David Sankoff, Matthew Mazowita, D. Sankoff, 2005, RECOMB.

Rearrangement Phylogeny of Genomes in Contig Form

David Sankoff, Adriana Muñoz, D. Sankoff, 2009, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Session Introduction

David Sankoff, Bernard M. E. Moret, Pavel A. Pevzner, 2003, Pacific Symposium on Biocomputing.

A Model for Biased Fractionation after Whole Genome Duplication

David Sankoff, Chunfang Zheng, Baoyong Wang, 2012, RECOMB.

Chromosomal breakpoint re-use in the inference of genome sequence rearrangement

Phil Trinh, David Sankoff, 2004, RECOMB '04.

15 Computational Complexity and Cladistics

David Sankoff, Henry M. Hoenigswald, Linda F. Wiener, 1987 .

Practical aliquoting of flowering plant genomes

David Sankoff, Chunfang Zheng, D. Sankoff, 2013, BMC Bioinformatics.

Ancient eudicot hexaploidy meets ancestral eurosid gene order

David Sankoff, Chunfang Zheng, Victor A Albert, 2013, BMC Genomics.

Chromosomal Breakpoint Reuse in Genome Sequence Rearrangement

Phil Trinh, David Sankoff, D. Sankoff, 2005, J. Comput. Biol..

Listing All Sorting Reversals in Quadratic Time

Ghada Hany Badr, David Sankoff, Krister M. Swenson, 2010, WABI.

Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28 - July 1, 1998

David Sankoff, Richard H. Lathrop, Christoph W. Sensen, 1998, Intelligent Systems in Molecular Biology.

Natural Parameter Values for Generalized Gene Adjacency

Zhenyu Yang, David Sankoff, 2009, RECOMB-CG.

The Reconstruction of Doubled Genomes

David Sankoff, Nadia El-Mabrouk, D. Sankoff, 2003, SIAM J. Comput..

Algorithms for the Extraction of Synteny Blocks from Comparative Maps

David Sankoff, Qian Zhu, Chunfang Zheng, 2007, WABI.

Descendants of Whole Genome Duplication within Gene Order Phylogeny

David Sankoff, Qian Zhu, Chunfang Zheng, 2008, J. Comput. Biol..

MATHEMATICAL DEVELOPMENTS IN LEXICOSTATISTIC THEORY

David Sankoff, D. Sankoff, 1973 .

Listing All Parsimonious Reversal Sequences: New Algorithms and Perspectives

Ghada Hany Badr, David Sankoff, Krister M. Swenson, 2011, J. Comput. Biol..

Removing Noise and Ambiguities from Comparative Maps in Rearrangement Analysis

David Sankoff, Qian Zhu, Chunfang Zheng, 2007, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Genome rearrangements with partially ordered chromosomes

David Sankoff, Chunfang Zheng, D. Sankoff, 2005, J. Comb. Optim..

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): Preface

Gad M. Landau, Steven Skiena, Roded Sharan, 2006, WABI 2012.

Cytogenetics, Molecular Genetics, Population Genetics

David Sankoff, Joseph H. Nadeau, 2000 .

Generalized adjacency and the conservation of gene clusters in genetic networks defined by synthetic lethals

Zhenyu Yang, David Sankoff, 2012, BMC Bioinformatics.

Exact and approximation algorithms for sorting by reversals, with application to genome rearrangement

David Sankoff, John D. Kececioglu, D. Sankoff, 1995, Algorithmica.

A Customized Class of Functions for Modeling and Clustering Gene Expression Profiles in Embryonic Stem Cells

David Sankoff, Miguel A. Andrade-Navarro, Shenggang Li, 2008, BSB.

Accurate prediction of orthologs in the presence of divergence after duplication

David Sankoff, Manuel Lafond, Mona Meghdari Miardan, 2018 .

Phylogenetic Invariants for Genome Rearrangements

David Sankoff, Mathieu Blanchette, D. Sankoff, 1999, J. Comput. Biol..

Conserved segment identification

David Sankoff, Vincent Ferretti, Joseph H. Nadeau, 1997, RECOMB '97.

Reconstructing the pre-doubling genome

David Sankoff, Nadia El-Mabrouk, David Bryant, 1999, RECOMB.

Natural Parameter Values for Generalized Gene Adjacency

Zhenyu Yang, David Sankoff, D. Sankoff, 2009, RECOMB-CG.

Rearrangement of Noisy Genomes

David Sankoff, Chunfang Zheng, D. Sankoff, 2006, International Conference on Computational Science.

Generating 3D Virtual Populations from Pictures of a Few Individuals

Nadia Magnenat-Thalmann, David Sankoff, Won-Sook Lee, 1999, WADS.

Proceedings of the Sixth Annual International Conference on Computational Biology, RECOMB 2002, Washington, DC, USA, April 18-21, 2002

David Sankoff, Sorin Istrail, Pavel A. Pevzner, 2002, RECOMB.

The Trees in the Peaks

David Sankoff, Chunfang Zheng, Eric Lyons, 2016, AlCoB.

Scaffold Filling under the Breakpoint and Related Distances

David Sankoff, Binhai Zhu, Chunfang Zheng, 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Front Matter, Table of Contents, Preface, Conference Organization

David Sankoff, Binhai Zhu, Gonzalo Navarro, 2018, Annual Symposium on Combinatorial Pattern Matching.

Internal Validation of Ancestral Gene Order Reconstruction in Angiosperm Phylogeny

David Sankoff, Chunfang Zheng, Victor A. Albert, 2008, RECOMB-CG.

Linguistics, Statistics in

David Sankoff, D. Sankoff, 2006 .

Generalized Adjacency in Genetic Networks and the Conservation of Functional Gene Clusters

Zhenyu Yang, David Sankoff, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine.

Power Boosts for Cluster Tests

David Sankoff, Lani Haque, D. Sankoff, 2005, Comparative Genomics.

A formal grammar for code‐switching 1

David Sankoff, Shana Poplack, D. Sankoff, 1981 .

Locating rearrangement events in a phylogeny based on highly fragmented assemblies

David Sankoff, Chunfang Zheng, D. Sankoff, 2016, BMC Genomics.

Exact and Approximation Algorithms for the Inversion Distance Between Two Chromosomes

David Sankoff, John D. Kececioglu, D. Sankoff, 1993, CPM.

Gene order in rosid phylogeny, inferred from pairwise syntenies among extant genomes

David Sankoff, Chunfang Zheng, 2012, BMC Bioinformatics.

Proceedings of 5th Asia-Pacific Bioinformatics Conference, APBC 2007, 15-17 January 2007, Hong Kong, China

Lusheng Wang, David Sankoff, Francis Y. L. Chin, 2007, Asia-Pacific Bioinformatics Conference.

Rearrangement Phylogeny of Genomes in Contig Form

David Sankoff, Adriana Muñoz, 2009, ISBRA.

A Randomized FPT Approximation Algorithm for Maximum Alternating-Cycle Decomposition with Applications

David Sankoff, Binhai Zhu, Letu Qingge, 2018, COCOON.

Issues in the Reconstruction of Gene Order Evolution

Zhenyu Yang, David Sankoff, Qian Zhu, 2010, Journal of Computer Science and Technology.

Ultrasound tongue contour extraction using BowNet network: A deep learning approach

David Sankoff, M. Hamed Mozaffari, Won-Sook Lee, 2019, 178th Meeting of the Acoustical Society of America.

Multiple genome rearrangements

David Sankoff, Mathieu Blanchette, D. Sankoff, 1998, RECOMB '98.

Multichromosomal Genome Median and Halving Problems

David Sankoff, Chunfang Zheng, Eric Tannier, 2008, WABI.

Stability of Rearrangement Measures in the Comparison of Genome Sequences

David Sankoff, Lani Haque, Matthew Mazowita, 2006, J. Comput. Biol..

Listing all sorting reversals in quadratic time

Ghada Hany Badr, David Sankoff, Krister M. Swenson, 2010, Algorithms for Molecular Biology.

A Statistically Fair Comparison of Ancestral Genome Reconstructions, Based on Breakpoint and Rearrangement Distances

David Sankoff, Zaky Adam, 2010, J. Comput. Biol..

Graph-Theoretic Modelling of the Domain Chaining Problem

Simone Dantas, David Sankoff, Chunfang Zheng, 2015, WABI.

Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution

David Sankoff, Monique Turmel, Claude Lemieux, 2006, Comparative Genomics.

Polyploids, genome halving and phylogeny

David Sankoff, Qian Zhu, Chunfang Zheng, 2007, ISMB/ECCB.

Tests for Gene Clusters Satisfying the Generalized Adjacency Criterion

David Sankoff, Ximing Xu, 2008, BSB.

Conserved Segment Identification

David Sankoff, Vincent Ferretti, Joseph H. Nadeau, 1997, J. Comput. Biol..

Genome Aliquoting Revisited

David Sankoff, Robert Warren, 2010, RECOMB-CG.

Statistical Evaluation of Genome Rearrangement

David Sankoff, 2006, RECOMB.

Escape from Parsimony of a Double-Cut-and-Join Genome Evolution Process

David Sankoff, Arash Jamshidpey, Mona Meghdari Miardan, 2021, J. Comput. Biol..

Validation of Automated Chromosome Recovery in the Reconstruction of Ancestral Gene Order

David Sankoff, Lingling Jin, Qiaoji Xu, 2021, Algorithms.

Guest Editorial for the 16th Asia Pacific Bioinformatics Conference

David Sankoff, Louxin Zhang, Guoliang Li, 2018, TCBB.

Branching Out to Speciation in a Model of Fractionation: The Malvaceae

David Sankoff, Chunfang Zheng, Yue Zhang, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized Adjacencies and Chromosomal Gene Co-Occurrences

David Sankoff, Lingling Jin, Qiaoji Xu, 2021, J. Comput. Biol..

GRAVITY MODELS AND INTERACTION PROBABILITIES

David Sankoff, Luc-Normand Tellier, D. Sankoff, 1975 .

Transmission, Education and Integration in Projections of Language Shift in Valencia

David Sankoff, D. Sankoff, Raquel Casesnoves Ferrer, 2004 .

Longest common subsequences of two random sequences

David Sankoff, V. Chvátal, D. Sankoff, 1975, Advances in Applied Probability.

On the Rate of Replacement of Word-Meaning Relationships

David Sankoff, 1970 .

Sets of medians in the non-geodesic pseudometric space of unsigned genomes with breakpoints

David Sankoff, Aryo Jamshidpey, Arash Jamshidpey, 2014, BMC Genomics.

The production of code-mixed discourse

David Sankoff, D. Sankoff, 2002, COLING.

Reconstructing the History of Yeast Genomes

David Sankoff, D. Sankoff, 2009, PLoS genetics.

Singularities in the analysis of binomial data

David Sankoff, D. Sankoff, P. Rousseau, 1978 .

Probabilistic models of genome shuffling

David Sankoff, Martin Goldstein, 1989 .

Chloroplast Gene Order and the Divergence of Plants and Algae, from the Normalized Number of Induced Breakpoints

David Sankoff, David Bryant, Monique Turmel, 2000 .

The lengths of undiscovered conserved segments in comparative maps

David Sankoff, Joseph H. Nadeau, D. Sankoff, 1998, Mammalian Genome.

Generalized Gene Adjacencies, Graph Bandwidth, and Clusters in Yeast Evolution

David Sankoff, Vicky Choi, Qian Zhu, 2008, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Linguistic Variation: Models and Methods

David Sankoff, D. Sankoff, 1978 .

The collapse of gene complement following whole genome duplication

David Sankoff, Chunfang Zheng, Qian Zhu, 2010, BMC Genomics.

Context-free grammars and nonnegative matrices

David Sankoff, D. Sankoff, 1972 .

Computational linguistics and statistics in the analysis of the Montreal French Corpus

David Sankoff, D. Sankoff, Rejean Lessard, 1977 .

Analysis of gene order evolution beyond single-copy genes.

David Sankoff, Nadia El-Mabrouk, D. Sankoff, 2012, Methods in molecular biology.

Genome Halving with an Outgroup

David Sankoff, Chunfang Zheng, Qian Zhu, 2006 .

Chromosomal distributions of breakpoints in cancer, infertility, and evolution.

David Sankoff, D. Sankoff, Melanie Deneault, 2002, Theoretical population biology.

Frequency of insertion-deletion, transversion, and transition in the evolution of 5S ribosomal RNA

David Sankoff, Guy Lapalme, D. Sankoff, 1976, Journal of Molecular Evolution.

Structural vs. functional mechanisms of duplicate gene loss following whole genome doubling

David Sankoff, Chunfang Zheng, Baoyong Wang, 2015, BMC Bioinformatics.

The Dimensionality of Grammatical Variation.

David Sankoff, Henrietta J. Cedergren, D. Sankoff, 1976 .

A tree · a window · a hill; generalization of nearest-neighbor interchange in phylogenetic optimization

David Sankoff, Jotun Hein, D. Sankoff, 1994 .

The evolutionary relationships among known life forms

David Sankoff, Michael W. Gray, Robert Cedergren, 2005, Journal of Molecular Evolution.

Rearrangements and chromosomal evolution.

David Sankoff, D. Sankoff, 2003, Current opinion in genetics & development.

COMPUTATIONAL COMPLEXITY OF INFERRING PHYLOGENIES BY COMPATIBILITY

David Sankoff, William H. E. Day, W. H. Day, 1986 .

The pineapple genome and the evolution of CAM photosynthesis

David Sankoff, Yun Zheng, Chunfang Zheng, 2015, Nature Genetics.

Genome Halving with an Outgroup

David Sankoff, Chunfang Zheng, Qian Zhu, 2006, Evolutionary bioinformatics online.

Quadratic tree invariants for multivalued characters

David Sankoff, D. Sankoff, Suzanne Drolet, 1990 .

Tree enumeration modulo a consensus

David Sankoff, D. Sankoff, M. Constantinescu, 1986 .

The where and wherefore of evolutionary breakpoints

David Sankoff, D. Sankoff, 2009, Journal of biology.

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

David Sankoff, David Heckerman, Jinjin Song, 2018, Nature Genetics.

Accuracy and Robustness of Analyses Based on Numbers of Genes in Observed Segments

David Sankoff, David Bryant, Marie-Noelle Parent, 2000 .

Edit Distance for Genome Comparison Based on Non-local Operations * 1 Role of Rearrangements in Evolution

David Sankoff, Robert Cedergren, Bruno Paquin, .

On the uses of variable rules

William Labov, David Sankoff, D. Sankoff, 1979, Language in Society.

Evolution of fragmented mitochondrial ribosomal RNA genes inChlamydomonas

David Sankoff, D. Sankoff, D. Spencer, 1996, Journal of Molecular Evolution.

Chromosome rearrangements in evolution: From gene order to genome sequence and back

David Sankoff, Joseph H Nadeau, D. Sankoff, 2003, Proceedings of the National Academy of Sciences of the United States of America.

THE PHILADELPHIA STORY IN THE SPANISH CARIBBEAN

David Sankoff, Shana Poplack, D. Sankoff, 1987 .

Linguistics: The Cambridge Survey: Sociolinguistics and syntactic variation

David Sankoff, D. Sankoff, 1988 .

The case of the nonce loan in Tamil

David Sankoff, Swathi Vanniarajan, D. Sankoff, 1990, Language Variation and Change.

The effect of massive gene loss following whole genome duplication on the algorithmic reconstruction of the ancestral populus diploid.

David Sankoff, Chunfang Zheng, Jim Leebens-Mack, 2008, Computational systems bioinformatics. Computational Systems Bioinformatics Conference.

The evolving trna molecul

David Sankoff, Robert Cedergren, Henri Grosjean, 1981 .

MODELS AND ANALYSES OF GENOMIC EVOLUTION

David Sankoff, D. Sankoff, 1993 .

Probability and linguistic variation

David Sankoff, D. Sankoff, 1978, Synthese.

Competing influences on gender assignment: Variable process, stable outcome

David Sankoff, Shana Poplack, Alicia Pousada, 1982 .

Comparative Mapping and Genome Rearrangement

David Sankoff, D. Sankoff, 1999 .

AN INEQUALITY FOR PROBABILITIES

David Sankoff, Donald A. Dawson, D. Dawson, 1967 .

Statistical evidence for rule ordering

David Sankoff, D. Sankoff, P. Rousseau, 1989, Language Variation and Change.

How to predict the evolution of a bilingual community

David Sankoff, 2008 .