Stephan Aiche

Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry

Knut Reinert, Erhan Kenar, Timo Sachsenberg, 2015, Proteomics.

From the Desktop to the Grid: conversion of KNIME Workflows to gUSE

Jens Krüger, Knut Reinert, Oliver Kohlbacher, 2013, IWSG.

From the desktop to the grid: scalable bioinformatics via workflow conversion

Sandra Gesing, Knut Reinert, Oliver Kohlbacher, 2016, BMC Bioinformatics.

Inferring Proteolytic Processes from Mass Spectrometry Time Series Data

Stephan Aiche, Stephan Aiche, 2013 .

ProteomicsDB

Helmut Krcmar, Mathias Wilhelm, Harald Kienegger, 2017, Nucleic Acids Res..

Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning

Mathias Wilhelm, Stephan Aiche, Ulf Reimer, 2019, Nature Methods.

MSSimulator: Simulation of mass spectrometry data.

Knut Reinert, Stephan Aiche, Sandro Andreotti, 2011, Journal of proteome research.

Mechanism of cisplatin proximal tubule toxicity revealed by integrating transcriptomics, proteomics, metabolomics and biokinetics.

Stephan Aiche, Theresa Kristl, Christian G Huber, 2015, Toxicology in vitro : an international journal published in association with BIBRA.

ProteomicsDB: a multi-omics and multi-organism resource for life science research

Helmut Krcmar, Mathias Wilhelm, Harald Kienegger, 2019, Nucleic Acids Res..

Evaluation of drug-induced neurotoxicity based on metabolomics, proteomics and electrical activity measurements in complementary CNS in vitro models.

Knut Reinert, Stephan Aiche, Theresa Kristl, 2015, Toxicology in vitro : an international journal published in association with BIBRA.

Building ProteomeTools based on a complete synthetic human proteome

Mathias Wilhelm, Ruedi Aebersold, Stephan Aiche, 2017, Nature Methods.