John N. Weinstein

发表

A user’s guide to the online resources for data exploration, visualization, and discovery for the Pan-Cancer Analysis of Whole Genomes project (PCAWG)

Mary Goldman, Junjun Zhang, Nuno A. Fonseca, 2019 .

BMC Bioinformatics BioMed Central Methodology article VennMaster: Area-proportional Euler diagrams for functional GO

Hongfang Liu, John N. Weinstein, Hans A. Kestler, 2008 .

Mistaken Identifiers: Gene name errors can be introduced inadvertently when using Excel in bioinformatics

John N. Weinstein, David W. Kane, Barry Zeeberg, 2004, BMC Bioinformatics.

Development of a robust classifier for quality control of reverse-phase protein arrays

John N. Weinstein, Wenbin Liu, Kevin R. Coombes, 2015, Bioinform..

SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts

John N. Weinstein, Michael C. Ryan, James A. Cleland, 2012, Bioinform..

BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data

Steven J. M. Jones, John N. Weinstein, Richard K. Wilson, 2012, Bioinform..

SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis

Hongfang Liu, John N. Weinstein, D. Curtis Jamison, 2007, BMC Bioinformatics.

SoS Notebook: An Interactive Multi-Language Data Analysis Environment

John N. Weinstein, Bo Peng, Jun Ma, 2018 .

PRADA: pipeline for RNA sequencing data analysis

John N. Weinstein, Michael F. Berger, Gad Getz, 2014, Bioinform..

Exposing the cancer genome atlas as a SPARQL endpoint

John N. Weinstein, Jonas S. Almeida, Helena F. Deus, 2010, J. Biomed. Informatics.

Quality assessment of microarrays: Visualization of spatial artifacts and quantitation of regional biases

John N. Weinstein, Mark Reimers, J. Weinstein, 2005, BMC Bioinformatics.

High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID)

John N. Weinstein, David W. Kane, David Bryant, 2005, BMC Bioinformatics.

Ontogenomic study of the relationship between number of gene splice variants and GO categorization

John N. Weinstein, D. Curtis Jamison, Barry Zeeberg, 2010, Bioinform..

Comparison of a Neural Net-Based QSAR Algorithm (PCANN) with Hologram- and Multiple Linear Regression-Based QSAR Approaches: Application to 1, 4-Dihydropyridine-Based Calcium Channel Antagonists

John N. Weinstein, Subhash C. Basak, Vellarkad N. Viswanadhan, 2001, J. Chem. Inf. Comput. Sci..

AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets

Gang Qu, Hongfang Liu, John N. Weinstein, 2007, Bioinform..

TCGASpliceSeq a compendium of alternative mRNA splicing in cancer

Robert Brown, John N. Weinstein, Xiaoping Su, 2015, Nucleic Acids Res..

SpliceCenter: A suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies

Hongfang Liu, John N. Weinstein, Barry Zeeberg, 2008, BMC Bioinformatics.

PurityEst: estimating purity of human tumor samples using next-generation sequencing data

Li Zhang, John N. Weinstein, Jianping Zhang, 2012, Bioinform..

Abstract 291: Building a program in cancer bioinformatics and computational biology: A balancing act

John N. Weinstein, 2018 .

Mining and Visualizing Large Anticancer Drug Discovery Databases

Jae K. Lee, John N. Weinstein, Leming Shi, 2000, J. Chem. Inf. Comput. Sci..

Development of Gene Ontology Tool for Biological Interpretation of Genomic and Proteomic Data

John N. Weinstein, May D. Wang, David W. Kane, 2003, AMIA.

ElemCor: accurate data analysis and enrichment calculation for high-resolution LC-MS stable isotope labeling experiments

John N. Weinstein, Bo Peng, Di Du, 2019, BMC Bioinformatics.

VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue

John N. Weinstein, Xiaoping Su, Hui Yao, 2013, Bioinform..

Genetic function approximation in the molecular pharmacology of cancer

John N. Weinstein, Timothy G. Myers, Leming M. Shi, 1997, Proceedings of International Conference on Neural Networks (ICNN'97).

PathwaysWeb: a gene pathways API with directional interactions, expanded gene ontology, and versioning

John N. Weinstein, Bradley M. Broom, James M. Melott, 2016, Bioinform..

Online resources for PCAWG data exploration, visualization, and discovery

Mary Goldman, Junjun Zhang, Nuno A. Fonseca, 2017 .

RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis

Hongfang Liu, John N. Weinstein, Barry Zeeberg, 2011, BMC Bioinformatics.

Small-sample precision of ROC-related estimates

Blaise Hanczar, John N. Weinstein, Michael L. Bittner, 2010, Bioinform..

COMBO: New Concepts and Methods for Designing and Analyzing Experiments on Combination Therapy

John N. Weinstein, Barry Bunow, 1992 .

Analysis of gene expression data of the NCl 60 cancer cell lines using Bayesian hierarchical effects model

John N. Weinstein, Lawrence H. Smith, Lorraine K. Tanabe, 2001, SPIE BiOS.

Inference of large-scale topology of gene regulation networks by neural nets

John N. Weinstein, John J. Grefenstette, Sohyoung Kim, 2003, SMC'03 Conference Proceedings. 2003 IEEE International Conference on Systems, Man and Cybernetics. Conference Theme - System Security and Assurance (Cat. No.03CH37483).

SpliceSeq 2.0: a tool for analysis and visualization of splicing variation in RNASeq data

John N. Weinstein, Michael J. Ryan, RyangGuk Kim, 2014 .

SoS Notebook: an interactive multi-language data analysis environment

Gao Wang, John N. Weinstein, Bo Peng, 2018, bioRxiv.

CellMiner: A Database Tool for the NCI-60 Cancer Cell Lines

John N. Weinstein, David W. Kane, Sudhir Varma, 2008, BIOCOMP.

AbMiner: A bioinformatic resource on available monoclonal antibodies and corresponding gene identifiers for genomic, proteomic, and immunologic studies

John N. Weinstein, David W. Kane, Margot Sunshine, 2006, BMC Bioinformatics.

Mining the NCI Anticancer Drug Discovery Databases: Genetic Function Approximation for the QSAR Study of Anticancer Ellipticine Analogues

John N. Weinstein, Leming Shi, Yi Fan, 1998, J. Chem. Inf. Comput. Sci..

Framework for Identifying Common Aberrations in DNA Copy Number Data

John N. Weinstein, Zohar Yakhini, Anya Tsalenko, 2007, RECOMB.

Transport properties of charge-mosaic membranes II. Experimental studies

John N. Weinstein, Braj Mohan Misra, S. Roy Caplan, 1973 .

Transport properties of charge-mosaic membranes I. Theoretical models

John N. Weinstein, S. Roy Caplan, Barry Bunow, 1972 .

Transport properties of charge-mosaic membranes III. Piezodialysis

John N. Weinstein, S. Roy Caplan, Colin R. Gardner, 1973 .