Thomas LaFramboise

发表

A flexible rank-based framework for detecting copy number aberrations from array data

Thomas LaFramboise, Wendy Winckler, Roman K. Thomas, 2009, Bioinform..

Detection and quantification of mitochondrial DNA deletions from next-generation sequence data

Thomas LaFramboise, Colleen M. Bosworth, Sneha Grandhi, 2017, BMC Bioinformatics.

Session Introduction

Benjamin J. Raphael, Mehmet Koyutürk, Mark R. Chance, 2011, Pacific Symposium on Biocomputing.

Accurate estimation of short read mapping quality for next-generation genome sequencing

Matthew Ruffalo, Mehmet Koyutürk, Soumya Ray, 2012, Bioinform..

An optimization framework for unsupervised identification of rare copy number variation from SNP array data

Mehmet Koyutürk, Thomas LaFramboise, Gökhan Yavaş, 2009, Genome Biology.

Post-NGS: Interpretation and analysis of next generation sequencing data for basic and translational science

Benjamin J. Raphael, Mehmet Koyutürk, Mark R. Chance, 2012, PSB 2012.

Pluribus—Exploring the Limits of Error Correction Using a Suffix Tree

Mehmet Koyutürk, Ananth Grama, Thomas LaFramboise, 2017, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

CytoConverter: a web-based tool to convert karyotypes to genomic coordinates

Thomas LaFramboise, Janet Wang, T. LaFramboise, 2019, BMC Bioinformatics.

Comparative analysis of algorithms for next-generation sequencing read alignment

Matthew Ruffalo, Mehmet Koyutürk, Thomas LaFramboise, 2011, Bioinform..

A graph-theoretic approach to testing associations between disparate sources of functional genomics data

Robert Gentleman, Thomas LaFramboise, Denise Scholtens, 2004, Bioinform..

Power to detect selective allelic amplification in genome-wide scans of tumor data

Thomas LaFramboise, Matthew L. Freedman, Itsik Pe'er, 2010, Bioinform..

Optimization Algorithms for Identification and Genotyping of Copy Number Polymorphisms in Human Populations

Mehmet Koyutürk, Thomas LaFramboise, Gökhan Yavas, 2010, PRIB.

COKGEN: A Software for the Identification of Rare Copy Number Variation from SNP Microarrays

Z. Meral Özsoyoglu, Mehmet Koyutürk, Thomas LaFramboise, 2010, Pacific Symposium on Biocomputing.

Visually Meaningful Histopathological Features for Automatic Grading of Prostate Cancer

M. Khalid Khan, Metin Nafi Gürcan, Mehmet Koyutürk, 2017, IEEE Journal of Biomedical and Health Informatics.

Allele-Specific Amplification in Cancer Revealed by SNP Array Analysis

Cheng Li, Thomas LaFramboise, David Harrington, 2005, PLoS Comput. Biol..

Whole-exome sequencing enhances prognostic classification of myeloid malignancies

Matthew Ruffalo, Mehmet Koyutürk, Jaroslaw Maciejewski, 2015, J. Biomed. Informatics.

Suffix-Tree Based Error Correction of NGS Reads Using Multiple Manifestations of an Error

Ananth Grama, Mehmet Koyutürk, Thomas LaFramboise, 2013, BCB.

Frequency of germline genomic homozygosity associated with cancer cases.

Thomas LaFramboise, Charis Eng, T. LaFramboise, 2008, JAMA.

Discovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing

Xiaofeng Zhu, Mehmet Koyutürk, Sean Maxwell, 2014, BMC Genomics.

Activation of the AXL Kinase Causes Resistance to EGFR-Targeted Therapy in Lung Cancer

Jae Cheol Lee, Thomas LaFramboise, Chang-Min Choi, 2012, Nature Genetics.

Genomic representations using concatenates of Type IIB restriction endonuclease digestion fragments.

Thomas LaFramboise, Matthew Meyerson, Saikat DebRoy, 2004, Nucleic acids research.

Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions.

Laura Tolosi, Michael Peyton, Thomas Zander, 2009, The Journal of clinical investigation.

Calling amplified haplotypes in next generation tumor sequence data.

Thomas LaFramboise, Matthew L. Freedman, Ninad Dewal, 2012, Genome research.

Sensitive mutation detection in heterogeneous cancer specimens by massively parallel picoliter reactor sequencing

Thomas LaFramboise, Levi A Garraway, Kwok-Kin Wong, 2006, Nature Medicine.

PCR-Free Enrichment of Mitochondrial DNA from Human Blood and Cell Lines for High Quality Next-Generation DNA Sequencing

Thomas LaFramboise, Colleen M. Bosworth, Sneha Grandhi, 2015, PloS one.

Toward accurate high-throughput SNP genotyping in the presence of inherited copy number variation

Thomas LaFramboise, L. Macconaill, T. LaFramboise, 2007, BMC Genomics.

A 32 kb Critical Region Excluding Y402H in CFH Mediates Risk for Age-Related Macular Degeneration

Rajiv Raman, Ronnie George, Lingam Vijaya, 2011, PloS one.

CHD7 Targets Active Gene Enhancer Elements to Modulate ES Cell-Specific Gene Expression

Lusy Handoko, Paul Flicek, Thomas LaFramboise, 2010, PLoS genetics.

Mutational patterns in the breast cancer mitochondrial genome, with clinical correlates.

Thomas LaFramboise, T. LaFramboise, Sarah McMahon, 2014, Carcinogenesis.