Henry van den Bedem

发表

Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops

Jean-Claude Latombe, Guanfeng Liu, Peggy Yao, 2008, TCBB.

qFit 3: Protein and ligand multiconformer modeling for X-ray crystallographic and single-particle cryo-EM density maps

Henry van den Bedem, Blake T. Riley, Gydo C. P. van Zundert, 2020, bioRxiv.

AtomNet PoseRanker: Enriching Ligand Pose Quality for Dynamic Proteins in Virtual High-Throughput Screens

Henry van den Bedem, Kate A. Stafford, Kate Stafford, 2021, J. Chem. Inf. Model..

qFit-ligand Reveals Widespread Conformational Heterogeneity of Drug-Like Molecules in X-Ray Electron Density Maps.

Henry van den Bedem, Pooja Suresh, Rasmus Fonseca, 2018, Journal of medicinal chemistry.

Crystal structure of an Apo mRNA decapping enzyme (DcpS) from Mouse at 1.83 Å resolution

Adam Godzik, Henry van den Bedem, Slawomir K. Grzechnik, 2005, Proteins.

Crystal structure of thy1, a thymidylate synthase complementing protein from Thermotoga maritima at 2.25 Å resolution

Adam Godzik, Henry van den Bedem, Slawomir K. Grzechnik, 2002, Proteins.

Crystal cryocooling distorts conformational heterogeneity in a model Michaelis complex of DHFR.

David A Sivak, Henry van den Bedem, David A. Sivak, 2014, Structure.

Automated identification of functional dynamic networks from X-ray crystallography

Henry van den Bedem, Gira Bhabha, James S. Fraser, 2013, Nature Methods.

Crystal structure of a single‐stranded DNA‐binding protein (TM0604) from Thermotoga maritima at 2.60 Å resolution

Adam Godzik, Henry van den Bedem, Slawomir K. Grzechnik, 2006, Proteins.

Crystal structure of an alanine‐glyoxylate aminotransferase from Anabaena sp. at 1.70 Å resolution reveals a noncovalently linked PLP cofactor

Adam Godzik, Henry van den Bedem, Slawomir K. Grzechnik, 2005, Proteins.

Crystal structure of a PIN (PilT N‐terminus) domain (AF0591) from Archaeoglobus fulgidus at 1.90 Å resolution

Adam Godzik, Henry van den Bedem, Slawomir K. Grzechnik, 2004, Proteins.

Modeling discrete heterogeneity in X-ray diffraction data by fitting multi-conformers.

Ankur Dhanik, Henry van den Bedem, Ashley M Deacon, 2009, Acta crystallographica. Section D, Biological crystallography.

Mix-and-inject XFEL crystallography reveals gated conformational dynamics during enzyme catalysis

Michael E. Wall, Mark Hunter, Nicholas K. Sauter, 2019, Proceedings of the National Academy of Sciences.

Crystal structure of Hsp33 chaperone (TM1394) from Thermotoga maritima at 2.20 Å resolution

Adam Godzik, Henry van den Bedem, Joanna Hale, 2005, Proteins.

Crystal structure of the first eubacterial Mre11 nuclease reveals novel features that may discriminate substrates during DNA repair.

John A Tainer, Adam Godzik, Henry van den Bedem, 2010, Journal of molecular biology.

Conformational variation of proteins at room temperature is not dominated by radiation damage

Henry van den Bedem, James S. Fraser, Daniel A. Keedy, 2017, Journal of synchrotron radiation.

Crystal structure of an ADP‐ribosylated protein with a cytidine deaminase‐like fold, but unknown function (TM1506), from Thermotoga maritima at 2.70 Å resolution

Adam Godzik, Henry van den Bedem, Slawomir K. Grzechnik, 2008, Proteins.

Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR

Henry van den Bedem, James S. Fraser, Peter E. Wright, 2014, Proceedings of the National Academy of Sciences.

Cryo-EM structures of Helicobacter pylori vacuolating cytotoxin A oligomeric assemblies at near-atomic resolution

Wah Chiu, Henry van den Bedem, Michael F. Schmid, 2019, Proceedings of the National Academy of Sciences.

Atomic resolution experimental phase information reveals extensive disorder and bound 2-methyl-2,4-pentanediol in Ca(2+)-calmodulin.

Henry van den Bedem, Jiusheng Lin, Axel T Brunger, 2016, Acta crystallographica. Section D, Structural biology.

Accessing protein conformational ensembles using room-temperature X-ray crystallography

Nathaniel Echols, Tom Alber, Henry van den Bedem, 2011, Proceedings of the National Academy of Sciences.

Structural Biology and Crystallization Communications Structure of a Membrane-attack Complex/perforin (macpf) Family Protein from the Human Gut Symbiont Bacteroides Thetaiotaomicron

Herbert L. Axelrod, Constantina Bakolitsa, Adam Godzik, 2022 .

Crystal structure of a putative NADPH‐dependent oxidoreductase (GI: 18204011) from mouse at 2.10 Å resolution

Adam Godzik, Henry van den Bedem, Slawomir K. Grzechnik, 2004, Proteins.

Crystal structure of an α/β serine hydrolase (YDR428C) from Saccharomyces cerevisiae at 1.85 Å resolution

Adam Godzik, Henry van den Bedem, Slawomir K. Grzechnik, 2004 .