Rutger A. Vos

发表

outsider: Install and run programs, outside of R, inside of R

Hannes Hettling, Dominic J. Bennett, Daniele Silvestro, 2020, J. Open Source Softw..

The HTS barcode checker pipeline, a tool for automated detection of illegally traded species from high-throughput sequencing data

Rutger A. Vos, Youri Lammers, Tamara Peelen, 2014, BMC Bioinformatics.

The Evolutionary Informatics (EvoInfo) working group wiki

Enrico Pontelli, Arlin Stoltzfus, Rutger A. Vos, 2015 .

Unifying European Biodiversity Informatics (BioUnify)

Vincent S. Smith, Ioannis Manakos, David R. Morse, 2016 .

DBTree: Very large phylogenies in portable databases

Rutger A. Vos, R. Vos, 2020, Methods in Ecology and Evolution.

Ten simple rules for managing high-throughput nucleotide sequencing data

Rutger A. Vos, 2016 .

BIO::Phylo-phyloinformatic analysis using perl

Rutger A. Vos, Chase A. Miller, Jason Caravas, 2011, BMC Bioinformatics.

WGS2NCBI - Toolkit for preparing genomes for submission to NCBI

Rutger A. Vos, Nnadi Nnaemeka Emmanuel, John Chinyere Aguiyi, 2019, J. Open Source Softw..

Modelling the niches of wild and domesticated Ungulate species using deep learning

Laurens Hogeweg, Rutger A. Vos, Mark Rademaker, 2019, bioRxiv.

The Bio::Phylo libraries for phylogenetic data analysis, version 2.0

Hannes Hettling, Rutger A. Vos, Hannes Hettling, 2017, bioRxiv.

Data from: Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis

Arlin Stoltzfus, Jamie Whitacre, Sudhir Kumar, 2012 .

Taxonomic Classification of Ants (Formicidae) from Images using Deep Learning

Rutger A. Vos, Marijn J.A. Boer, R. Vos, 2018, bioRxiv.

Building a Foundation To Enable Semantic Technologies For Phylogenetically-Based Comparative Analyses

Enrico Pontelli, Maryam Panahiazar, Arlin Stoltzfus, 2011 .

Unlocking the Legacy: The Untapped Value of Data in Taxonomic Literature

David King, Donat Agosti, Guido Sautter, 2014 .

The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

Robert Hoehndorf, Georgios V. Gkoutos, Quentin Groom, 2016, J. Biomed. Semant..

BioHackathon 2015: Semantics of data for life sciences and reproducible research

Akira R. Kinjo, Núria Queralt-Rosinach, Michel Dumontier, 2020, F1000Research.

restez: Create and Query a Local Copy of GenBank in R

Hannes Hettling, Dominic J. Bennett, Daniele Silvestro, 2018, J. Open Source Softw..

Shō-coin: A Knowledge-Based Economy for Life Sciences

Olga L. Giraldo, Alexander García Castro, Pjotr Prins, 2017, SWAT4LS.

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics

Daniel MacLean, Pjotr Prins, Rutger A. Vos, 2012, Bioinform..

Open Science, Open Data, Open Source

Pedro L. Fernandes, Rutger A. Vos, R. Vos, 2017 .

TreeBASEdmp: A Toolkit for Phyloinformatic Research

Rutger A. Vos, William H. Piel, R. Vos, 2018, bioRxiv.

Species Distribution Modelling Using Deep Learning

Laurens Hogeweg, Rutger A. Vos, Mark Rademaker, 2019 .

The 3rd DBCLS BioHackathon : Improving life science with semantic web technologies

Akira R. Kinjo, Fumikazu Konishi, Hammad Afzal, 2013 .

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

Akira R. Kinjo, Kiyoko F. Aoki-Kinoshita, Kiyoshi Asai, 2010, J. Biomed. Semant..

Data release for "OrchID: a Generalized Framework for Taxonomic Classification of Images Using Evolved Artificial Neural Networks"

Rutger A. Vos, Serrano Pereira, Barbara Gravendeel, 2015 .

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications

Akira R. Kinjo, Fumikazu Konishi, Kiyoko F. Aoki-Kinoshita, 2011, J. Biomed. Semant..

The 2006 NESCent Phyloinformatics Hackathon: A Field Report

Hilmar Lapp, James P. Balhoff, Todd J. Vision, 2007, Evolutionary Bioinformatics Online.

The delayed rise of present-day mammals (vol 446, pg 507, 2007)

Kate E. Jones, Samantha A. Price, Marcel Cardillo, 2008 .

Publishing re-usable phylogenetic trees, in theory and practice

Arlin Stoltzfus, Jamie Whitacre, Rutger A. Vos, 2011 .

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient

Enrico Pontelli, Luke J. Harmon, Christian M. Zmasek, 2013, BMC Bioinformatics.

Modeling Abiotic Niches of Crops and Wild Ancestors Using Deep Learning: A Generalized Approach

Rutger A. Vos, W. G. Hulleman, R. Vos, 2019, bioRxiv.

Inspecting Morphological Features of Mosquito Wings for Identification with Image Recognition Tools

Rutger A. Vos, Clinton Haarlem, R. Vos, 2018, bioRxiv.

OrchID: a Generalized Framework for Taxonomic Classification of Images Using Evolved Artificial Neural Networks

Rutger A. Vos, Barbara Gravendeel, Serrano Pereira, 2016, bioRxiv.

NeXML: Rich, Extensible, and Verifiable Representation of Comparative Data and Metadata

Hilmar Lapp, James P. Balhoff, Arlin Stoltzfus, 2012, Systematic biology.

SUPERSMART: ecology and evolution in the era of big data

R. Henrik Nilsson, Hannes Hettling, Michael J. Sanderson, 2014 .

Inferring large phylogenies: The big tree problem

Rutger A. Vos, R. Vos, 2006 .

Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa

R. Henrik Nilsson, Hannes Hettling, Michael J. Sanderson, 2016, Systematic biology.

TreeBASE2: Rise of the Machines

Val Tannen, Hilmar Lapp, Rutger A. Vos, 2010 .

Community engagement: The 'last mile' challenge for European research e-infrastructures

Vincent S. Smith, Gregor Hagedorn, David R. Morse, 2016 .