Damian Fermin

发表

SAINT: Probabilistic Scoring of Affinity Purification - Mass Spectrometry Data

Hyungwon Choi, Brett Larsen, Mike Tyers, 2010, Nature Methods.

SAINTq: Scoring protein‐protein interactions in affinity purification – mass spectrometry experiments with fragment or peptide intensity data

Hyungwon Choi, Anne-Claude Gingras, Jean-Philippe Lambert, 2016, Proteomics.

LuciPHOr2: site localization of generic post-translational modifications from tandem mass spectrometry data

Hyungwon Choi, Alexey I. Nesvizhskii, Damian Fermin, 2015, Bioinform..

iOmicsPASS: network-based integration of multiomics data for predictive subnetwork discovery

Hyungwon Choi, Damian Fermin, Kwok Pui Choi, 2019, npj Systems Biology and Applications.

A Web Resource for Improved Analysis of AP-MS Protein Interaction Data.

Tony Pawson, Hyungwon Choi, Jean-Philippe Lambert, 2013 .

Abacus: A computational tool for extracting and pre‐processing spectral count data for label‐free quantitative proteomic analysis

Alexey I Nesvizhskii, Damian Fermin, Venkatesha Basrur, 2011, Proteomics.

Nesvizhskii. Computational Analysis of Unassigned High Quality MS/MS Spectra in Large-scale Proteomic Datasets

Kang Ning, Damian Fermin, I Alexey, 2010 .

Sparsely correlated hidden Markov models with application to genome-wide location studies

Hyungwon Choi, Debashis Ghosh, Alexey I. Nesvizhskii, 2013, Bioinform..

EBprot: Statistical analysis of labeling‐based quantitative proteomics data

Hyungwon Choi, Damian Fermin, Hiromi W L Koh, 2015, Proteomics.

iOmicsPASS: a novel method for integration of multi-omics data over biological networks and discovery of predictive subnetworks

Hyungwon Choi, Damian Fermin, Kwok Pui Choi, 2018, bioRxiv.

QPROT: Statistical method for testing differential expression using protein-level intensity data in label-free quantitative proteomics.

Hyungwon Choi, Alexey I Nesvizhskii, Damian Fermin, 2015, Journal of proteomics.

SAW: A Method to Identify Splicing Events from RNA-Seq Data Based on Splicing Fingerprints

Kang Ning, Damian Fermin, D. Fermin, 2010, PloS one.

iProphet: Improved statistical validation of peptide and protein identifications in shotgun proteomics

Henry H N Lam, Luis Mendoza, Ruedi Aebersold, 2011 .

LuciPHOr: Algorithm for Phosphorylation Site Localization with False Localization Rate Estimation Using Modified Target-Decoy Approach*

Hyungwon Choi, Alexey I Nesvizhskii, Anne-Claude Gingras, 2013, Molecular & Cellular Proteomics.

Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics

Damian Fermin, Gilbert S Omenn, David J States, 2006, Genome Biology.

Quantitative Proteomic Profiling of Prostate Cancer Reveals a Role for miR-128 in Prostate Cancer*

Alexey I Nesvizhskii, Damian Fermin, Gilbert S Omenn, 2009, Molecular & Cellular Proteomics.

Multicohort analysis reveals baseline transcriptional predictors of influenza vaccination responses

Raphael Gottardo, Jacob Frelinger, Yuri Kotliarov, 2017, Science Immunology.

Identification of novel alternative splice isoforms of circulating proteins in a mouse model of human pancreatic cancer.

Damian Fermin, Yan Zhang, Gilbert S Omenn, 2009, Cancer research.

Reconstructing targetable pathways in lung cancer by integrating diverse omics data

Alexey I. Nesvizhskii, Damian Fermin, Arul M. Chinnaiyan, 2013, Nature Communications.

LuciPHOr 2 : site localization of generic post-translational modifications from tandem mass spectrometry data

Hyungwon Choi, Alexey I. Nesvizhskii, Damian Fermin, 2015 .

Significance Analysis of Spectral Count Data in Label-free Shotgun Proteomics*S

Hyungwon Choi, Alexey I Nesvizhskii, Damian Fermin, 2008, Molecular & Cellular Proteomics.

Calorie restriction alters mitochondrial protein acetylation

Damian Fermin, F. Alt, B. Schwer, 2009, Aging cell.