Noriko Hiroi

发表

Editorial: Quantitative Biology: Dynamics of Living Systems

Noriko Hiroi, Viji M. Draviam, Akira Funahashi, 2016, Front. Physiol..

Acceleration of discrete stochastic biochemical simulation using GPGPU

Noriko Hiroi, Akira Funahashi, Kei Sumiyoshi, 2015, Front. Physiol..

FPGA Implementation of a Data-Driven Stochastic Biochemical Simulator with the Next Reaction Method

Hiroaki Kitano, Yuichiro Shibata, Hideharu Amano, 2007, 2007 International Conference on Field Programmable Logic and Applications.

In vivo oriented modeling with consideration of intracellular crowding

Noriko Hiroi, Akira Funahashi, Keisuke Iba, 2013, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

LibSBMLSim: a reference implementation of fully functional SBML simulator

Noriko Hiroi, Akira Funahashi, Kazushige Nakamura, 2013, Bioinform..

Hardware-resource Utilization Analysis on an FPGA-Based Biochemical Simulator ReCSiP

Hiroaki Kitano, Yuichiro Shibata, Hideharu Amano, 2006 .

A Stochastic Biochemical Simulator with a Data-transfer Network on an FPGA

Hiroaki Kitano, Yuichiro Shibata, Hideharu Amano, 2006 .

Practical implementation of a network-based stochastic biochemical simulation system on an FPGA

Hiroaki Kitano, Yuichiro Shibata, Hideharu Amano, 2008, 2008 International Conference on Field Programmable Logic and Applications.

Efficient scheduling of rate law functions for ODE-based multimodel biochemical simulation on an FPGA

Hiroaki Kitano, Yuichiro Shibata, Kiyoshi Oguri, 2005, International Conference on Field Programmable Logic and Applications, 2005..

Performance Evaluation of an Fpga-Based Biochemical Simulator ReCSip

Hiroaki Kitano, Yuichiro Shibata, Hideharu Amano, 2006, 2006 International Conference on Field Programmable Logic and Applications.

From microscopy data to in silico environments for in vivo-oriented simulations

Heinz Koeppl, Noriko Hiroi, Akira Funahashi, 2012, EURASIP J. Bioinform. Syst. Biol..

ReCSiP: An FPGA‐based general‐purpose biochemical simulator

Hiroaki Kitano, Yuichiro Shibata, Hideharu Amano, 2007 .

An FPGA-based, multi-model simulation method for biochemical systems

Hiroaki Kitano, Yuichiro Shibata, Hideharu Amano, 2005, 19th IEEE International Parallel and Distributed Processing Symposium.

A datapath classification method for FPGA-based scientific application accelerator systems

Yuichiro Shibata, Kiyoshi Oguri, Hideharu Amano, 2010, 2010 International Conference on Field-Programmable Technology.

The systems biology simulation core algorithm

Andreas Zell, Nicolas Le Novère, Andreas Dräger, 2013, BMC Systems Biology.

A Combining Technique of Rate Law Functions for a Cost-Effective Reconfigurable Biological Simulator

Hiroaki Kitano, Yuichiro Shibata, Kiyoshi Oguri, 2007, 2007 International Conference on Field Programmable Logic and Applications.

An FPGA Implementation of High Throughput Stochastic Simulator for Large-Scale Biochemical Systems

Hiroaki Kitano, Yuichiro Shibata, Hideharu Amano, 2006, 2006 International Conference on Field Programmable Logic and Applications.

Physiological Intracellular Crowdedness is Defined by the Perimeter-to-Area Ratio of Sub-Cellular Compartments

Noriko Hiroi, Keisuke Iba, Akito Tabira, 2012, Front. Physio..

A framework for ODE-based multimodel biochemical simulations on an FPGAs

Hiroaki Kitano, Yuichiro Shibata, Hideharu Amano, 2005, International Conference on Field Programmable Logic and Applications, 2005..

A COMBININGTECHNIQUEOFRATELAW FUNCTIONSFOR A COST-EFFECTIVE RECONFIGURABLEBIOLOGICALSIMULATOR

Hiroaki Kitano, Yuichiro Shibata, Kiyoshi Oguri, 2007 .

Design of cellular simulation platform for SBML model

Hiroaki Kitano, Yuichiro Shibata, Hideharu Amano, 2005 .

FPGA-based Stochastic Biochemical Simulator

Hiroaki Kitano, Yuichiro Shibata, Yasunori Osana, 2006 .

A Performance Improvement Strategy for Numerical Integration on an FPGA-Based Biochemical Simulator ReCSiP

Hiroaki Kitano, Yuichiro Shibata, Hideharu Amano, 2006 .

Automatic Pipeline Construction Focused on Similarity of Rate Law Functions for an FPGA-based Biochemical Simulator

Yuichiro Shibata, Kiyoshi Oguri, Hideharu Amano, 2010, IPSJ Trans. Syst. LSI Des. Methodol..

Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development

Takahiro Yamada, Noriko Hiroi, Akira Funahashi, 2018, bioRxiv.

Predicting the future direction of cell movement with convolutional neural networks

Takahiro Yamada, Noriko Hiroi, Akira Funahashi, 2018, bioRxiv.

Deduction of intracellular sub-systems from a topological description of the network.

Hiroaki Kitano, Noriko Hiroi, Akira Funahashi, 2007, Molecular bioSystems.

Pipeline Scheduling with Input Port Constraints for an FPGA-Based Biochemical Simulator

Yuichiro Shibata, Kiyoshi Oguri, Hideharu Amano, 2009, ARC.

The design of scalable stochastic biochemical simulator on FPGA

Hiroaki Kitano, Yuichiro Shibata, Hideharu Amano, 2005, Proceedings. 2005 IEEE International Conference on Field-Programmable Technology, 2005..

Meeting report of the International Workshop on Quantitative Biology 2012: mesoscopic and microscopic worlds meet

Noriko Hiroi, Viji M. Draviam, Akira Funahashi, 2013, Front. Physio..

Assessing uncertainty in model parameters based on sparse and noisy experimental data

Noriko Hiroi, Akira Funahashi, Maciej Swat, 2014, Front. Physiol..

Configuring area and performance: Empirical evaluation on an FPGA-based biochemical simulator

Yuichiro Shibata, Kiyoshi Oguri, Hideharu Amano, 2009, 2009 International Conference on Field Programmable Logic and Applications.

A Modular Approach to Heterogeneous Biochemical Model Simulation on an FPGA

Yuichiro Shibata, Kiyoshi Oguri, Hideharu Amano, 2009, 2009 International Conference on Reconfigurable Computing and FPGAs.

Coarse grain parallelization and acceleration of biochemical ODE simulation using GPGPU

Noriko Hiroi, Akira Funahashi, Kei Sumiyoshi, 2014 .

Fas-mediated apoptosis in Jurkat cells is suppressed in the pre-G2/M phase

Noriko Hiroi, Sei-ichi Tanuma, H. Maruta, 2004, Apoptosis.

High-speed microscopy with an electrically tunable lens to image the dynamics of in vivo molecular complexes.

Ryuichi Tanimoto, Hiromasa Oku, Noriko Hiroi, 2015, The Review of scientific instruments.

Detection of Temperature Difference in Neuronal Cells

Ryuichi Tanimoto, Noriko Hiroi, Akira Funahashi, 2016, Scientific Reports.

Physiological Environment Induces Quick Response – Slow Exhaustion Reactions

Christoph Flamm, Noriko Hiroi, Akira Funahashi, 2011, Front. Physio..

Mammalian Rcd1 is a novel transcriptional cofactor that mediates retinoic acid‐induced cell differentiation

Takaaki Ito, Noriko Hiroi, Takahiro Ochiya, 2002, The EMBO journal.

Kinetics of Dimension-Restricted Conditions

Noriko Hiroi, Akira Funahashi, A. Funahashi, 2007 .