Tomer Shlomi

发表

Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model

Eytan Ruppin, Keren Yizhak, Tomer Benyamini, 2010, Bioinform..

Flux-Based vs. Topology-Based Similarity of Metabolic Genes

Roded Sharan, Ron Y. Pinter, Eytan Ruppin, 2006, WABI.

Correction: Efficient Modeling of MS/MS Data for Metabolic Flux Analysis

Tomer Shlomi, Naama Tepper, 2015, PloS one.

Prediction of Microbial Growth Rate versus Biomass Yield by a Metabolic Network with Kinetic Parameters

Tomer Shlomi, Ron Milo, Matthias Heinemann, 2012, PLoS Comput. Biol..

Associating Genes and Protein Complexes with Disease via Network Propagation

Roded Sharan, Eytan Ruppin, Tomer Shlomi, 2010, PLoS Comput. Biol..

Constraint-based functional similarity of metabolic genes: going beyond network topology

Roded Sharan, Ron Y. Pinter, Eytan Ruppin, 2007, Bioinform..

iMAT: an integrative metabolic analysis tool

Eytan Ruppin, Tomer Shlomi, Hadas Zur, 2010, Bioinform..

BMC Bioinformatics BioMed Central

Roded Sharan, Eytan Ruppin, Trey Ideker, 2006 .

Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect

Roded Sharan, Eytan Ruppin, Tomer Benyamini, 2011, PLoS Comput. Biol..

Evolutionary conservation and over-representation of functionally enriched network patterns in the yeast regulatory network

Eytan Ruppin, Ofer Meshi, Tomer Shlomi, 2007, BMC Systems Biology.

An integrated computational approach for metabolic flux analysis coupled with inference of tandem-MS collisional fragments

Tomer Shlomi, Naama Tepper, T. Shlomi, 2013, Bioinform..

Pathway-Based Functional Analysis of Metagenomes

Ron Y. Pinter, Tomer Shlomi, Sivan Bercovici, 2010, RECOMB.

Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways

Tomer Shlomi, Naama Tepper, T. Shlomi, 2010, Bioinform..

Comparison of Protein-Protein Interaction Confidence Assignment Schemes

Roded Sharan, Eytan Ruppin, Trey Ideker, 2005, Systems Biology and Regulatory Genomics.

Network-based prediction of metabolic enzymes' subcellular localization

Eytan Ruppin, Tomer Shlomi, Asaph Aharoni, 2009, Bioinform..

Conservation of Expression and Sequence of Metabolic Genes Is Reflected by Activity Across Metabolic States

Eytan Ruppin, Tomer Shlomi, Naama Barkai, 2006, PLoS Comput. Biol..

QNet: A Tool for Querying Protein Interaction Networks

Roded Sharan, Eytan Ruppin, Vineet Bafna, 2007, RECOMB.

QNet: A Tool for Querying Protein Interaction Networks

Roded Sharan, Eytan Ruppin, Vineet Bafna, 2007, RECOMB.

Pathway-Based Functional Analysis of Metagenomes

Ron Y. Pinter, Tomer Shlomi, Sivan Bercovici, 2010, RECOMB.

QPath: a method for querying pathways in a protein-protein interaction network

Roded Sharan, Eytan Ruppin, Tomer Shlomi, 2006, BMC Bioinformatics.

SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments

Roded Sharan, Eytan Ruppin, Trey Ideker, 2007, ISMB/ECCB.

Pepitope: epitope mapping from affinity-selected peptides

Roded Sharan, Eytan Ruppin, Itay Mayrose, 2007, Bioinform..

Gene loss rate: a probabilistic measure for the conservation of eukaryotic genes

Roded Sharan, Eytan Ruppin, Elhanan Borenstein, 2006, Nucleic acids research.

Constraint-Based Modelling Of Perturbed Organisms: A ROOM for improvement

Eytan Ruppin, Omer Berkman, Tomer Shlomi, 2004 .

Predicting selective drug targets in cancer through metabolic networks

Eytan Ruppin, Ori Folger, Tomer Shlomi, 2011, Molecular Systems Biology.

Systematic condition-dependent annotation of metabolic genes.

Roded Sharan, Eytan Ruppin, Tomer Shlomi, 2007, Genome research.

Haem oxygenase is synthetically lethal with the tumour suppressor fumarate hydratase

Gabriela Kalna, Eytan Ruppin, Ori Folger, 2011, Nature.

Computational Design of Auxotrophy-Dependent Microbial Biosensors for Combinatorial Metabolic Engineering Experiments

Tomer Shlomi, Naama Tepper, T. Shlomi, 2011, PloS one.

A network-based method for predicting gene-nutrient interactions and its application to yeast amino-acid metabolism.

Yonina C. Eldar, Eytan Ruppin, Yonina C Eldar, 2009, Molecular bioSystems.

Glutamine-driven oxidative phosphorylation is a major ATP source in transformed mammalian cells in both normoxia and hypoxia

Tomer Shlomi, Robin Mathew, Eileen White, 2013, Molecular systems biology.

Flux balance analysis accounting for metabolite dilution

Eytan Ruppin, Ori Folger, Tomer Benyamini, 2010, Genome Biology.

Translation efficiency in humans: tissue specificity, global optimization and differences between developmental stages

Roded Sharan, Eytan Ruppin, Tamir Tuller, 2010, Nucleic acids research.

Inferring cancer dependencies on metabolic genes from large-scale genetic screens

Tomer Shlomi, Won Dong Lee, T. Shlomi, 2019, BMC Biology.

Efficient Modeling of MS/MS Data for Metabolic Flux Analysis

Tomer Shlomi, Naama Tepper, T. Shlomi, 2015, PloS one.

Quantitation of cellular metabolic fluxes of methionine.

Jing Fan, Tomer Shlomi, Joshua D Rabinowitz, 2014, Analytical chemistry.