Ishwor Thapa

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Graph Database for Mining of Multi-omics Data

Ishwor Thapa, 2019 .

Assessing the impact of refactoring activities on the JHotDraw project

Harvey P. Siy, Ishwor Thapa, 2010, SAC '10.

Bio-Logic Builder: A Non-Technical Tool for Building Dynamical, Qualitative Models

Jay Pedersen, Ishwor Thapa, Tomáš Helikar, 2012, PloS one.

Functional identification in correlation networks using gene ontology edge annotation

Hesham H. Ali, Kathryn Dempsey, Ishwor Thapa, 2012, Int. J. Comput. Biol. Drug Des..

Sambad - Computer Interfaces for Non-literates

Patrick A. V. Hall, Ishwor Thapa, Sagun Dhakhwa, 2007, HCI.

Computational Approaches for Drug Design: A Focus on Drug Repurposing

Ishwor Thapa, Hesham Ali, Suyeon Kim, 2020, IWBBIO.

Identifying Structural Changes in Correlation Networks Models of Cancer Gene Expression by Stage

Ishwor Thapa, Hesham Ali, Qianran Li, 2019, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

A comparison between hierarchical clustering and community detection method in the collection of gene targets for molecular identification of pathogenic fungi

Sanjukta Bhowmick, Ishwor Thapa, Dhundy Bastola, 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops.

A study of bias and increasing organismal complexity from their post‐translational modifications and reaction site interplays

Ishwor Thapa, Dhundy Bastola, Oliver Bonham-Carter, 2017, Briefings Bioinform..

Digital Image Analysis for DETCHIP® Code Determination.

Kiran Bastola, Ishwor Thapa, Andrea E Holmes, 2012, Signal and image processing : an international journal.

On Identifying and Analyzing Significant Nodes in Protein-Protein Interaction Networks

Hesham H. Ali, Kathryn Dempsey, Ishwor Thapa, 2013, 2013 IEEE 13th International Conference on Data Mining Workshops.

Next generation sequence assembler mis-assembly of phage genomes with terminal redundancy

Hesham H. Ali, Ishwor Thapa, Julia Warnke-Sommer, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

A novel approach to identify shared fragments in drugs and natural products

Ishwor Thapa, Dhundy Bastola, Dario Ghersi, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Guilt-by association approach to identify novel human aging-related genes using protein domains

Ishwor Thapa, Dhundy Bastola, Jasjit K. Banwait, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Identifying modular function via edge annotation in gene correlation networks using Gene Ontology search

Hesham H. Ali, Kathryn Dempsey, Ishwor Thapa, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Multiplatform biomarker identification using a data-driven approach enables single-sample classification

Christian Haas, Ishwor Thapa, Ling Zhang, 2019, BMC Bioinformatics.

A New Graph Database System for Multi-omics Data Integration and Mining Complex Biological Information

Ishwor Thapa, Hesham Ali, H. Ali, 2019, ICCABS.

On Mining Biological Signals Using Correlation Networks

Hesham H. Ali, Kathryn Dempsey, Ishwor Thapa, 2013, 2013 IEEE 13th International Conference on Data Mining Workshops.

A Comparison of Computational Approaches in the Molecular Identification of Pathogenic Organisms

Sanjukta Bhowmick, Ishwor Thapa, Dhundy Bastola, 2012, 2012 IEEE Second International Conference on Healthcare Informatics, Imaging and Systems Biology.

Transcriptome analysis of HIV-1 virus in understanding the effect of antiretroviral drugs (cART) and methamphetamine on the virus

Ishwor Thapa, Dhundy Bastola, Howard S. Fox, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Multiplatform biomarker identification using a data-driven approach enables single-sample classification

Christian Haas, Ling Zhang, Ishwor Thapa, 2019, BMC Bioinformatics.

On Identifying Candidates for Drug Repurposing for the Treatment of Ulcerative Colitis using Gene Expression Data

Ishwor Thapa, Hesham Ali, Suyeon Kim, 2019, IWBBIO.

A Graph-Theoretic Approach for Identifying Bacterial Inter-correlations and Functional Pathways in Microbiome Data

Hesham H. Ali, Ishwor Thapa, Suyeon Kim, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

A Multiomics Graph Database System for Biological Data Integration and Cancer Informatics.

Ishwor Thapa, Hesham Ali, 2020, Journal of computational biology : a journal of computational molecular cell biology.

A systems biology approach for modeling microbiomes using split graphs

Hesham H. Ali, Lifeng Zhu, Guoqing Lu, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Image Analysis of DETECHIP® – A Molecular Sensing Array

Kiran Bastola, Ishwor Thapa, Andrea E. Holmes, 2012 .

FunSet: an open-source software and web server for performing and displaying Gene Ontology enrichment analysis

Ishwor Thapa, Matthew L. Hale, Dario Ghersi, 2019, BMC Bioinformatics.

Identifying and assessing the impact of refactoring by mining version repositories

Ishwor Thapa, 2009 .

Evidence of post translational modification bias extracted from the tRNA and corresponding amino acid interplay across a set of diverse organisms

Ishwor Thapa, Dhundy Bastola, Oliver Bonham-Carter, 2014, BCB.

Review of Methods for the Identification of Zygomycetes With an Emphasis on Advances in Molecular Diagnostics

Ishwor Thapa, Dhundy Raj Bastola, Peter Charles Iwen, 2011 .

Coexpression Network Analysis of miRNA-142 Overexpression in Neuronal Cells

Ishwor Thapa, Dhundy Bastola, Howard S. Fox, 2015, BioMed research international.