Hongfei Lin

发表

Neural network-based approaches for biomedical relation classification: A review

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2019, J. Biomed. Informatics.

A hybrid PSO-Viterbi algorithm for HMMs parameters weighting in Part-of-Speech tagging

Hongfei Lin, Shichang Sun, Hongbo Liu, 2011, 2011 International Conference of Soft Computing and Pattern Recognition (SoCPaR).

Improving User Attribute Classification with Text and Social Network Attention

Hongfei Lin, Bo Xu, Yumeng Li, 2019, Cognitive Computation.

Detection of Depression-Related Posts in Reddit Social Media Forum

Liang Yang, Bo Xu, Hongfei Lin, 2019, IEEE Access.

Construction of dynamic probabilistic protein interaction networks for protein complex identification

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2016, BMC Bioinformatics.

ML-CNN: A novel deep learning based disease named entity recognition architecture

Hongfei Lin, Zhihao Yang, Yin Zhang, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Extracting drug-drug interactions with hybrid bidirectional gated recurrent unit and graph convolutional network

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2019, J. Biomed. Informatics.

Gene Name Automatic Recognition in Biomedical Literature

Hongfei Lin, Zhihao Yang, Jing Zhao, 2006, 2006 6th World Congress on Intelligent Control and Automation.

An Attractive Force Model for Weighting Links in Query-Dependant Web Page Ranking

Hongfei Lin, Xinyue Liu, Liguo Zhang, 2012, J. Comput..

A Boosting Approach for Learning to Rank Using SVD with Partially Labeled Data

Hongfei Lin, Zhihao Yang, Yuan Lin, 2009, AIRS.

Deep neural network based protein-protein interaction extraction from biomedical literature

Hongfei Lin, Zhihao Yang, Ling Luo, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Emotion Tag Based Music Retrieval Algorithm

Hongfei Lin, Jing Li, Lijuan Zhou, 2010, AIRS.

CIDExtractor: A chemical-induced disease relation extraction system for biomedical literature

Hongfei Lin, Zhihao Yang, Yin Zhang, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Group-enhanced ranking

Hongfei Lin, Ajith Abraham, Hongbo Liu, 2015, Neurocomputing.

Stock Market Trend Prediction Using Recurrent Convolutional Neural Networks

Hongfei Lin, Bo Xu, Shaowu Zhang, 2018, NLPCC.

Automatic Opinion Analysis Based on SVM and Distance-Weighted Computing

Wei Guo, Hongfei Lin, 2008, 2008 International Conference on Advanced Language Processing and Web Information Technology.

Biomedical event trigger detection by dependency-based word embedding

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

EMIR: A Novel Music Retrieval System for Mobile Devices Incorporating Analysis of User Emotion

Hongfei Lin, Cathal Gurrin, Lijuan Marissa Zhou, 2012, MMM.

Patent Retrieval Based on Multiple Information Resources

Hongfei Lin, Bo Xu, Shaowu Zhang, 2016, AIRS.

Hybrid Regularized Echo State Network for Multivariate Chaotic Time Series Prediction

Tie Qiu, Hongfei Lin, Min Han, 2019, IEEE Transactions on Cybernetics.

Biomedical event trigger detection based on bidirectional LSTM and CRF

Yan Wang, Hongfei Lin, Shaowu Zhang, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

DUTIR at TREC 2006: Genomics and Enterprise Tracks

Hongfei Lin, Zhihao Yang, Baoyan Liu, 2006, TREC.

Sentiment Analysis Based on Chinese Thinking Modes

Hongfei Lin, Liang Yang, Yuan Lin, 2012 .

Wavelet-denoising multiple echo state networks for multivariate time series prediction

Hongfei Lin, Min Han, Meiling Xu, 2018, Inf. Sci..

Combating Web spam through trust-distrust propagation with confidence

Hongfei Lin, Xinyue Liu, You Wang, 2013, Pattern Recognit. Lett..

GrEDeL: A Knowledge Graph Embedding Based Method for Drug Discovery From Biomedical Literatures

Hongfei Lin, Zhihao Yang, Michel Dumontier, 2019, IEEE Access.

York University at TREC 2009: Relevance Feedback Track

Ben He, Hongfei Lin, Xiangji Huang, 2009, TREC.

Protein-Protein Interaction Article Classification: A Knowledge-enriched Self-Attention Convolutional Neural Network Approach

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Tripartite-Replicated Softmax Model for Document Representations

Lin Wang, Hongfei Lin, Bo Xu, 2017, CCIR.

Low-Resource Cross-Domain Product Review Sentiment Classification Based on a CNN with an Auxiliary Large-Scale Corpus

Hongfei Lin, Liang Yang, Yuhai Yu, 2017, Algorithms.

First Place Solution for NLPCC 2017 Shared Task Social Media User Modeling

Yan Wang, Hongfei Lin, Jian Wang, 2017, NLPCC.

Exploiting the performance of dictionary-based bio-entity name recognition in biomedical literature

Hongfei Lin, Zhihao Yang, Yanpeng Li, 2008, Comput. Biol. Chem..

An Integrated Approach for Medical Image Retrieval through Combining Textual and Visual Features

Qinmin Hu, Hongfei Lin, Xiangji Huang, 2009, CLEF.

Combining labeled and unlabeled data for biomédical event extraction

Qian Xu, Hongfei Lin, Zhihao Yang, 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops.

Enhancing Biomedical Text Summarization Using Semantic Relation Extraction

Hongfei Lin, Zhihao Yang, Yanpeng Li, 2011, PloS one.

CRGA: Homographic pun detection with a contextualized-representation: Gated attention network

Hongfei Lin, Xiaochao Fan, Liang Yang, 2020, Knowl. Based Syst..

Twitter part-of-speech tagging using pre-classification Hidden Markov model

Hongfei Lin, Ajith Abraham, Shichang Sun, 2012, 2012 IEEE International Conference on Systems, Man, and Cybernetics (SMC).

Protein-protein interaction extraction based on contextual and syntactic features: Protein-protein interaction extraction based on contextual and syntactic features

Hongfei Lin, Jian Wang, Ming-hui Ji, 2013 .

Predicting protein complexes in protein interaction networks: A supervised learning based method

Hongfei Lin, Zhihao Yang, Nan Tang, 2013, BIBM.

Combining the Attention Network and Semantic Representation for Chinese Verb Metaphor Identification

Hongfei Lin, Shaowu Zhang, Dongyu Zhang, 2019, IEEE Access.

DUTIR at TREC 2008 Blog Track

Wei Guo, Hongfei Lin, Rui Song, 2008, TREC.

PPIExtractor: A Protein Interaction Extraction and Visualization System for Biomedical Literature

Hongfei Lin, Zhihao Yang, Zhehuan Zhao, 2013, IEEE Transactions on NanoBioscience.

Identifying protein complexes with fuzzy machine learning model

Hongfang Liu, Bo Xu, Hongfei Lin, 2013, Proteome Science.

Data integration and supervised learning based protein complex detection method

Xiaohua Hu, Hongfei Lin, Zhihao Yang, 2014, 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Deep Transfer Learning for Modality Classification of Medical Images

Hongfei Lin, Zhehuan Zhao, Hai Guo, 2017, Inf..

Deep graph search based disease related knowledge summarization from biomedical literature

Hongfei Lin, Zhihao Yang, Jian Wang, 2014, 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Opinion Mining in e-Learning System

Hongfei Lin, Zhihao Yang, Dan Song, 2007, 2007 IFIP International Conference on Network and Parallel Computing Workshops (NPC 2007).

KeSACNN: a protein-protein interaction article classification approach based on deep neural network

Jian Wang, Hongfei Lin, Zhihao Yang, 2019 .

A two-stage feature selection method for text categorization

Hongfei Lin, Jiana Meng, Yuhai Yu, 2010, 2010 Seventh International Conference on Fuzzy Systems and Knowledge Discovery.

An improved spectral clustering algorithm based on local neighbors in kernel space

Hongfei Lin, Xinyue Liu, Xing Yong, 2011, Comput. Sci. Inf. Syst..

Ontology integration to identify protein complex in protein interaction networks

Bo Xu, Hongfei Lin, Zhihao Yang, 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

A hybrid protein-protein interaction triple extraction method for biomedical literature

Hongfei Lin, Zhihao Yang, Cong Sun, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Musical Query-by-Semantic-Description Based on Convolutional Neural Network

Hongfei Lin, Shaowu Zhang, Dongyu Zhang, 2017, CCIR.

Heterographic Pun Recognition via Pronunciation and Spelling Understanding Gated Attention Network

Di Wu, Hongfei Lin, Xiaochao Fan, 2019, WWW.

A Framework for Semisupervised Feature Generation and Its Applications in Biomedical Literature Mining

Xiaohua Hu, Hongfei Lin, Yanpeng Li, 2011, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Extraction New Sentiment Words in Weibo Based on Relative Branch Entropy

Hongfei Lin, Shaowu Zhang, Peng Fei, 2018, CCIR.

Learning to rank using multiple loss functions

Hongfei Lin, Bo Xu, Yuan Lin, 2019, Int. J. Mach. Learn. Cybern..

Assessment of learning to rank methods for query expansion

Hongfei Lin, Bo Xu, Yuan Lin, 2016, J. Assoc. Inf. Sci. Technol..

Knowledge transfer based on feature representation mapping for text classification

Hongfei Lin, Yanpeng Li, Jiana Meng, 2011, Expert Syst. Appl..

Biomedical event trigger detection by dependency-based word embedding

Hongfei Lin, Zhihao Yang, Yuanyuan Sun, 2015, BIBM.

Study on question answering system for biomedical domain

Bo Xu, Hongfei Lin, Baoyan Liu, 2009, 2009 IEEE International Conference on Granular Computing.

Affective Computing in E-learning

Hongfei Lin, Shichang Sun, Fengming Pan, 2010 .

The impact of protein interaction networks' characteristics on computational complex detection methods.

Bo Xu, Xiaoxia Liu, Hongfei Lin, 2018, Journal of theoretical biology.

Learning to rank-based gene summary extraction

Hongfei Lin, Yue Shang, Jiajin Wu, 2013, BMC Bioinformatics.

A Cross-Domain Sentiment Classification Method Based on Extraction of Key Sentiment Sentence

Hongfei Lin, Shaowu Zhang, Huali Liu, 2015, NLPCC.

Classifying protein complexes from candidate subgraphs using fuzzy machine learning model

Hongfang Liu, Kavishwar B. Wagholikar, Bo Xu, 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops.

DUTIR at the CCKS-2018 Task1: A Neural Network Ensemble Approach for Chinese Clinical Named Entity Recognition

Hongfei Lin, Zhihao Yang, Ling Luo, 2018, CCKS Tasks.

Learning to rank with groups

Hongfei Lin, Song Jin, Zheng Ye, 2010, CIKM.

Visual and Textual Sentiment Analysis of a Microblog Using Deep Convolutional Neural Networks

Hongfei Lin, Zhehuan Zhao, Jiana Meng, 2016, Algorithms.

Identifying Protein Complexes from PPI Networks Using GO Semantic Similarity

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine.

EMIR: A novel emotion-based music retrieval system

Hongfei Lin, Cathal Gurrin, Lijuan Marissa Zhou, 2012 .

An attention‐based BiLSTM‐CRF approach to document‐level chemical named entity recognition

Hongfei Lin, Zhihao Yang, Yin Zhang, 2018, Bioinform..

Integrating social annotations into topic models for personalized document retrieval

Hongfei Lin, Bo Xu, Yuan Lin, 2020, Soft Comput..

Chinese Emotion Commonsense Knowledge Base Construction and Its Application

Hongfei Lin, Shaowu Zhang, Jian Wang, 2018, CLSW.

Audio Retrieval Based on Manifold Ranking

Hongfei Lin, Xinyue Liu, Jing Qin, 2014, 2014 Sixth International Symposium on Parallel Architectures, Algorithms and Programming.

Enhancing the accuracy of knowledge discovery: a supervised learning method

Feng Zhou, Hongfei Lin, Zhihao Yang, 2014, BMC Bioinformatics.

Predicting Best Answerers for New Questions: An Approach Leveraging Convolution Neural Networks in Community Question Answering

Hongfei Lin, Shaowu Zhang, Jian Wang, 2016, SMP.

DUTIR at TREC 2011 Microblog Track

Hongfei Lin, Shaowu Zhang, Cunhui Shi, 2011, TREC.

BioWordVec, improving biomedical word embeddings with subword information and MeSH

Qingyu Chen, Zhiyong Lu, Hongfei Lin, 2019, Scientific Data.

A neural network approach to chemical and gene/protein entity recognition in patents

Yin Zhang, Hongfei Lin, Zhihao Yang, 2018, Journal of Cheminformatics.

Hierarchical Recurrent Convolutional Neural Network for Chemical-protein Relation Extraction from Biomedical Literature

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

The Identification of the Emotionality of Metaphorical Expressions Based on a Manually Annotated Chinese Corpus

Liang Yang, Hongfei Lin, Shaowu Zhang, 2018, IEEE Access.

KeSACNN: a protein-protein interaction article classification approach based on deep neural network

Jian Wang, Hongfei Lin, Zhihao Yang, 2019, Int. J. Data Min. Bioinform..

Social Annotation for Query Expansion Learning from Multiple Expansion Strategies

Hongfei Lin, Yuan Lin, Bo Xu, 2017, SMP.

SVM-based Protein-Protein Interaction Extraction from Medline abstracts

Hongfei Lin, Zhihao Yang, Baojin Cui, 2007, 2007 Second International Conference on Bio-Inspired Computing: Theories and Applications.

A multi-task learning based approach to biomedical entity relation extraction

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Disease-specific protein complex detection in the human protein interaction network with a supervised learning method

Xiaoxia Liu, Hongfei Lin, Zhihao Yang, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Improving Pseudo-Relevance Feedback With Neural Network-Based Word Representations

Liang Yang, Bo Xu, Hongfei Lin, 2018, IEEE Access.

A Personalized Recommendation System Based on User Portrait

Jian Wang, Hongfei Lin, Xuefei Li, 2019, Proceedings of the 2019 International Conference on Artificial Intelligence and Computer Science.

Passage retrieval based hidden knowledge discovery from biomedical literature

Hongfei Lin, Zhihao Yang, Ran Chen, 2011, Expert Syst. Appl..

DUTIR at TREC 2009: Chemical IR Track

Hongfei Lin, Song Jin, Zheng Ye, 2009, TREC.

HMNPPID: A Database of Protein-protein Interactions Associated with Human Malignant Neoplasms

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Integrating experimental and literature protein-protein interaction data for protein complex prediction

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2015, BMC Genomics.

Exploring Social Annotation Tags to Enhance Information Retrieval Performance

Hongfei Lin, Song Jin, Xiangji Huang, 2010, AMT.

HMNPPID—human malignant neoplasm protein–protein interaction database

Jian Wang, Zhiheng Li, Yijia Zhang, 2019, Human Genomics.

K-means and Graph-based Approaches for Chinese Word Sense Induction Task

Hongfei Lin, Lisha Wang, Xiaoling Sun, 2010, CIPS-SIGHAN.

Exploring Answer Information for Question Classification in Community Question Answering

Hongfei Lin, Zhihao Yang, Jian Wang, 2018, J. Multiple Valued Log. Soft Comput..

Ontology-Driven Affective Chinese Text Analysis and Evaluation Method

Hongfei Lin, Linhong Xu, 2007, ACII.

Revisiting Rocchio's Relevance Feedback Algorithm for Probabilistic Models

Ben He, Hongfei Lin, Xiangji Huang, 2010, AIRS.

Drug name recognition in biomedical texts: a machine-learning-based method.

Hongfei Lin, Zhihao Yang, Yanpeng Li, 2014, Drug discovery today.

Exploring the relation between the characteristics of protein interaction networks and the performances of computational complex detection methods

Xiaoxia Liu, Hongfei Lin, Zhihao Yang, 2014, 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Exploiting the contextual cues for bio-entity name recognition in biomedical literature

Hongfei Lin, Zhihao Yang, Yanpeng Li, 2008, J. Biomed. Informatics.

Mining a multilingual association dictionary from Wikipedia for cross-language information retrieval

Ben He, Hongfei Lin, Xiangji Huang, 2012, J. Assoc. Inf. Sci. Technol..

A Weak Supervised Learning Method for Essential Protein Detection Based on STRING Database and Learning Representation

Yibin Zhang, Yijia Zhang, Hongfei Lin, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Relation path feature embedding based convolutional neural network method for drug discovery

Di Zhao, Hongfei Lin, Jian Wang, 2019, BMC Medical Informatics and Decision Making.

A Deep Learning Approach With Deep Contextualized Word Representations for Chemical–Protein Interaction Extraction From Biomedical Literature

Hongfei Lin, Zhihao Yang, Jian Wang, 2019, IEEE Access.

Ontology integration to identify protein complex in protein interaction networks

Bo Xu, Hongfei Lin, Zhihao Yang, 2010, BIBM.

DIGNiFI: Discovering causative genes for orphan diseases using protein-protein interaction networks

Zhiyong Lu, Hongfei Lin, Zhihao Yang, 2016, BMC Systems Biology.

Full-attention Based Drug Drug Interaction Extraction Exploiting User-generated Content

Feng Xia, Bo Xu, Wei Zheng, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Protein-Protein Interactions Extraction from Biomedical Literatures

Hongfei Lin, Zhihao Yang, Yanpeng Li, 2011 .

Transfer learning based on graph ranking

Hongfei Lin, Jiana Meng, Hongfei Lin, 2012, 2012 9th International Conference on Fuzzy Systems and Knowledge Discovery.

Applying Feature Coupling Generalization for Protein-Protein Interaction Extraction

Hongfei Lin, Zhihao Yang, Yanpeng Li, 2009, 2009 IEEE International Conference on Bioinformatics and Biomedicine.

End-to-end Answer Selection via Attention-Based Bi-LSTM Network

Hongfei Lin, Tongxuan Zhang, Yuqi Ren, 2018, 2018 1st IEEE International Conference on Hot Information-Centric Networking (HotICN).

Improve Diversity-oriented Biomedical Information Retrieval using Supervised Query Expansion

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Active Semi-supervised Spectral Clustering

Hongfei Lin, Xianchao Zhang, Linlin Zong, 2011, 2011 Fourth International Symposium on Parallel Architectures, Algorithms and Programming.

An effective neural model extracting document level chemical-induced disease relations from biomedical literature

Bo Xu, Xiaoxia Liu, Yijia Zhang, 2018, J. Biomed. Informatics.

Incorporating rich features to boost information retrieval performance: A SVM-regression based re-ranking approach

Hongfei Lin, Xiangji Huang, Zheng Ye, 2011, Expert Syst. Appl..

Segmenting Webpage with Gomory-Hu Tree Based Clustering

Ye Tian, Hongfei Lin, Xinyue Liu, 2011, J. Softw..

DUTIR at TREC 2011 Chemistry Track

Ping Zhang, Hongfei Lin, Yuan Lin, 2011, TREC.

Improving biomedical information retrieval by linear combinations of different query expansion techniques

Hongfei Lin, Bo Xu, Santosh Kumar Banbhrani, 2016, BMC Bioinformatics.

A two-stage feature selection method for text categorization

Hongfei Lin, Jiana Meng, 2010, FSKD.

A Knowledge Graph based Bidirectional Recurrent Neural Network Method for Literature-based Discovery

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

BioPPISVMExtractor: A protein-protein interaction extractor for biomedical literature using SVM and rich feature sets

Hongfei Lin, Zhihao Yang, Yanpeng Li, 2010, J. Biomed. Informatics.

WECA: A WordNet-Encoded Collocation-Attention Network for Homographic Pun Recognition

Di Wu, Hongfei Lin, Zhihao Yang, 2018, EMNLP.

Hongfei Lin, Yuan Lin, Yunlong Ma, 2011, CIKM '11.

Judging a Book by Its Cover: The Effect of Facial Perception on Centrality in Social Networks

Feng Xia, Hongfei Lin, Jie Hou, 2019, WWW.

A protein-protein interaction extraction approach based on deep neural network

Hongfei Lin, Zhihao Yang, Jian Wang, 2016, Int. J. Data Min. Bioinform..

Research on Focal Figures-Oriented Sentimental Question Answering

Qin Tang, Hongfei Lin, Rui Song, 2008, 2008 International Conference on Advanced Language Processing and Web Information Technology.

Ensemble of Neural Networks with Sentiment Words Translation for Code-Switching Emotion Detection

Hongfei Lin, Shaowu Zhang, Chen Chen, 2018, NLPCC.

Hash Subgraph Pairwise Kernel for Protein-Protein Interaction Extraction

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A social network model driven by events and interests

Hongfei Lin, Kan Xu, Xiaoling Sun, 2015, Expert Syst. Appl..

Biomolecular event trigger detection using neighborhood hash features.

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2013, Journal of theoretical biology.

DUTIR at the Session Track in TREC 2011

Wenfei Liu, Hongfei Lin, Yunlong Ma, 2011, TREC.

Topical community detection from mining user tagging behavior and interest

Hongfei Lin, Xiaoling Sun, Hongfei Lin, 2013, J. Assoc. Inf. Sci. Technol..

Learning to Rank with Likelihood Loss Functions

Hongfei Lin, Bo Xu, Yuan Lin, 2016, AIRS.

Learning to rank for biomedical information retrieval

Hongfei Lin, Zhihao Yang, Bo Xu, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Learning an enriched representation from unlabeled data for protein-protein interaction extraction

Xiaohua Hu, Hongfei Lin, Zhihao Yang, 2010, BMC Bioinformatics.

Semi-supervised method for biomedical event extraction

Qian Xu, Hongfei Lin, Zhihao Yang, 2013, Proteome Science.

Chemical-protein interaction extraction from biomedical literature: a hierarchical recurrent convolutional neural network method

Jian Wang, Hongfei Lin, Zhihao Yang, 2019, Int. J. Data Min. Bioinform..

Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks

Bo Xu, Xiaoxia Liu, Hongfei Lin, 2018, BMC Bioinform..

A method for predicting protein complex in dynamic PPI networks

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2016, BMC Bioinformatics.

Filtering Gene Ontology semantic similarity for identifying protein complexes in large protein interaction networks

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2012, Proteome Science.

Query expansion based on folksonomy tag co-occurrence analysis

Hongfei Lin, Song Jin, Sui Su, 2009, 2009 IEEE International Conference on Granular Computing.

Construction and Application of Chinese Emotional Corpus

Hongfei Lin, Liang Yang, 2012, CLSW.

DUTIR at TREC 2007 Genomics Track

Xiao Zhang, Hongfei Lin, Zhihao Yang, 2007, TREC.

Bi-directional Capsule Network Model for Chinese Biomedical Community Question Answering

Hongfei Lin, Zhihao Yang, Bo Xu, 2019, NLPCC.

A Normalized Encoder-Decoder Model for Abstractive Summarization Using Focal Loss

Hongfei Lin, Jian Wang, Yunsheng Shi, 2018, NLPCC.

Protein Complex Prediction in Large Ontology Attributed Protein-Protein Interaction Networks

Bo Xu, Yijia Zhang, Hongfei Lin, 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Drug–drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths

Wei Zheng, Yijia Zhang, Hongfei Lin, 2017, Bioinform..

A graph kernel based on context vectors for extracting drug-drug interactions

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2016, J. Biomed. Informatics.

DUTIR at TREC 2007 Blog Track

Qin Tang, Hongfei Lin, Zhihao Yang, 2007, TREC.

Hongfei Lin, Zhihao Yang, Jian Wang, 2015, BioMed research international.

Social annotation in query expansion: a machine learning approach

Hongfei Lin, Song Jin, Yuan Lin, 2011, SIGIR.

Two Phase Indexes Based Passage Retrieval in Biomedical Texts

Hongfei Lin, Zhihao Yang, Ran Chen, 2007, LSMS.

Query by Humming Systems Using Melody Matching Model Based on the Genetic Algorithm

Hongfei Lin, Xinyue Liu, Jing Qin, 2011, J. Softw..

Integrating Various Resources for Gene Name Normalization

Hongfei Lin, Zhihao Yang, Yanpeng Li, 2012, PloS one.

A hybrid model based on neural networks for biomedical relation extraction

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2018, J. Biomed. Informatics.

A Time-Sensitive Model for Microblog Retrieval

Hongfei Lin, Bo Xu, Qing Guo, 2013, NLPCC.

Improving the Performance of Bio-Entity Name Recognition in Biomedical Literature via the Contextual Cues

Hongfei Lin, Zhihao Yang, Yanpeng Li, 2007 .

DUTIR at TREC 2007 Enterprise Track

Hongfei Lin, Zhihao Yang, Hui Ren, 2007, TREC.

A Multiple Relevance Feedback Strategy with Positive and Negative Models

Hongfei Lin, Yunlong Ma, 2014, PloS one.

Uncertainty sampling-based active learning for protein-protein interaction extraction from biomedical literature

Hongfei Lin, Zhihao Yang, Baojin Cui, 2009, Expert Syst. Appl..

Convolutional neural networks for expert recommendation in community question answering

Hongfei Lin, Shaowu Zhang, Jian Wang, 2017, Science China Information Sciences.

Combining multiple disambiguation methods for gene mention normalization

Ning Xia, Hongfei Lin, Zhihao Yang, 2011, Expert Syst. Appl..

Corpus-based Extraction of Chinese Historical Term Translation Equivalents

Xiaoxia Liu, Hongfei Lin, Xiuying Li, 2010, Int. J. Asian Lang. Process..

Topic Detection with Hypergraph Partition Algorithm

Fenglong Ma, Hongfei Lin, Xinyue Liu, 2011, J. Softw..

Assembling Deep Neural Networks for Medical Compound Figure Detection

Hongfei Lin, Zhehuan Zhao, Jiana Meng, 2017, Inf..

A Bayesian network approach to context sensitive query expansion

Hongfei Lin, Xiangji Huang, Zheng Ye, 2011, SAC.

SemaTyP: a knowledge graph based literature mining method for drug discovery

Xiaoxia Liu, Hongfei Lin, Zhihao Yang, 2018, BMC Bioinformatics.

Towards A Better Performance for Medical Image Retrieval Using An Integrated Approach

Hongfei Lin, Xiangji Huang, Zheng Ye, 2009, CLEF.

Ranking support vector machine for multiple kernels output combination in protein–protein interaction extraction from biomedical literature

Yuan Lin, Hongfei Lin, Zhihao Yang, 2011, Proteomics.

Document triage for identifying protein–protein interactions affected by mutations: a neural network ensemble approach

Hongfei Lin, Zhihao Yang, Ling Luo, 2018, Database J. Biol. Databases Curation.

Social Media Processing

Hongfei Lin, Mingwen Wang, Guoxiong Xiang, 2016, Communications in Computer and Information Science.

Discover potential adverse drug reactions using the skip-gram model

Hongfei Lin, Zhihao Yang, Bo Xu, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Learning to rank-based gene summary extraction

Hongfei Lin, Yue Shang, Jiajin Wu, 2014, BMC Bioinformatics.

A Convolution-LSTM-Based Deep Neural Network for Cross-Domain MOOC Forum Post Classification

Hongfei Lin, Liang Yang, Yuhai Yu, 2017, Inf..

Homographic Puns Recognition Based on Latent Semantic Structures

Di Wu, Hongfei Lin, Xiaochao Fan, 2017, NLPCC.

Detecting Potential Adverse Drug Reactions Using Association Rules and Embedding Models

Hongfei Lin, Zhihao Yang, Bo Xu, 2017, ISBRA.

Modality Classification for Medical Images Using Multiple Deep Convolutional Neural Networks

Hongfei Lin, Xinghao Yu, Jiana Meng, 2015 .

A multiple distributed representation method based on neural network for biomedical event extraction

Hongfei Lin, Zhihao Yang, Jianhai Zhang, 2017, BMC Medical Informatics and Decision Making.

Predicting User Relationship from Scratch

Hongfei Lin, Zhihao Yang, Xiaoxia Liu, 2015, SMP.

Incorporating Dictionary Features into Conditional Random Fields for Gene/Protein Named Entity Recognition

Hongfei Lin, Zhihao Yang, Yanpeng Li, 2007, PAKDD Workshops.

PPIExtractor: A protein-protein interaction Extractor for biomédical literature

Hongfei Lin, Zhihao Yang, Zhehuan Zhao, 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine.

Biomedical event trigger detection based on convolutional neural network

Honglei Li, Hongfei Lin, Zhihao Yang, 2016, Int. J. Data Min. Bioinform..

Drug drug interaction extraction from biomedical literature using syntax convolutional neural network

Hongfei Lin, Zhihao Yang, Ling Luo, 2016, Bioinform..

Incorporating Sample Filtering into Subject-Based Ensemble Model for Cross-Domain Sentiment Classification

Hongfei Lin, Shaowu Zhang, Liang Yang, 2015, CCL.

Learning to rank using query-level regression

Hongfei Lin, Zhihao Yang, Zheng Ye, 2011, SIGIR.

Exploring Useful Features for Biomedical Event Trigger Detection

Qian Xu, Hongfei Lin, Zhihao Yang, 2013, J. Multiple Valued Log. Soft Comput..

Construction of a Chinese Corpus for the Analysis of the Emotionality of Metaphorical Expressions

Hongfei Lin, Bo Xu, Shaowu Zhang, 2018, ACL.

Adverse drug reaction detection via a multihop self-attention mechanism

Jian Wang, Yijia Zhang, Hongfei Lin, 2019, BMC Bioinformatics.

Learning to rank using smoothing methods for language modeling

Hongfei Lin, Yuan Lin, Kan Xu, 2013, J. Assoc. Inf. Sci. Technol..

Sells Out or Piles Up? A Sentiment Autoregressive Model for Predicting Sales Performance

Hongfei Lin, Shaowu Zhang, Liang Yang, 2012, AIRS.

Learning to Rank by Optimizing Expected Reciprocal Rank

Ping Zhang, Hongfei Lin, Yuan Lin, 2011, AIRS.

Detection of protein complexes from multiple protein interaction networks using graph embedding

Hongfei Lin, Zhihao Yang, Xiaoxia Liu, 2019, Artif. Intell. Medicine.

Detecting adverse drug reactions from social media based on multi-channel convolutional neural networks

Hongfei Lin, Zhihao Yang, Chen Shen, 2018, Neural Computing and Applications.

Learning to rank with cross entropy

Hongfei Lin, Yuan Lin, Kan Xu, 2011, CIKM '11.

Spatio-Temporal Interpolated Echo State Network for Meteorological Series Prediction

Tie Qiu, Hongfei Lin, Min Han, 2019, IEEE Transactions on Neural Networks and Learning Systems.

Neighborhood hash graph kernel for protein-protein interaction extraction

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2011, J. Biomed. Informatics.

Bidirectional long short-term memory with CRF for detecting biomedical event trigger in FastText semantic space

Hongfei Lin, Shaowu Zhang, Yan Wang, 2018, BMC Bioinformatics.

Example-Based Chinese Text Filtering Model

Tianshun Yao, Hongfei Lin, Xuegang Zhan, 1999, ICSC.

Incorporating rich background knowledge for gene named entity classification and recognition

Hongfei Lin, Zhihao Yang, Yanpeng Li, 2009, BMC Bioinformatics.

Predicting Best Answerers for New Questions: An Approach Leveraging Distributed Representations of Words in Community Question Answering

Hongfei Lin, Zhihao Yang, Bo Xu, 2015, 2015 Ninth International Conference on Frontier of Computer Science and Technology.

Improve Biomedical Information Retrieval Using Modified Learning to Rank Methods

Liang Yang, Bo Xu, Hongfei Lin, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A syntactic rule-based method for automatic pathway information extraction from biomédical literature

Hongfei Lin, Zhihao Yang, Yanhua Wang, 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops.

A Revised SimRank Approach for Query Expansion

Hongfei Lin, Song Jin, Yunlong Ma, 2010, AIRS.

Integrating multiple biomedical resources for protein complex prediction

Bo Xu, Yijia Zhang, Hongfei Lin, 2013, 2013 IEEE International Conference on Bioinformatics and Biomedicine.

Feature Transformation Method Enhanced Vandalism Detection in Wikipedia

Hongfei Lin, Yuan Lin, Tianshu Chang, 2012, AIRS.

Generating User-oriented Text Summarization Based on Social Networks Using Topic Models

Hongfei Lin, Zhihao Yang, Bo Xu, 2016, SMP.

Detecting Potential Adverse Drug Reactions from Health-Related Social Networks

Hongfei Lin, Zhihao Yang, Bo Xu, 2016, NLPCC/ICCPOL.

Combining local and global information for product feature extraction in opinion documents

Hongfei Lin, Bing Liu, Yuan Lin, 2016, Inf. Process. Lett..

Enhancing Biomedical Named Entity Classification Using Terabyte Unlabeled Data

Hongfei Lin, Zhihao Yang, Yanpeng Li, 2008, AIRS.

Multiple kernel learning in protein-protein interaction extraction from biomedical literature

Xiao Zhang, Hongfei Lin, Zhihao Yang, 2011, Artif. Intell. Medicine.

PC-SENE: A node embedding based method for protein complex detection

Bo Xu, Yijia Zhang, Hongfei Lin, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Finding a good query-related topic for boosting pseudo-relevance feedback

Hongfei Lin, Xiangji Huang, Zheng Ye, 2011, J. Assoc. Inf. Sci. Technol..

Query Expansion Based on User Quality in Folksonomy

Wenfei Liu, Hongfei Lin, Qing Guo, 2012, AIRS.

A graph-based approach to mining multilingual word associations from wikipedia

Hongfei Lin, Xiangji Huang, Zheng Ye, 2009, SIGIR.

Personality Predictions Based on User Behavior on the Facebook Social Media Platform

Liang Yang, Bo Xu, Hongfei Lin, 2018, IEEE Access.

Enhancing the accuracy of knowledge discovery: A supervised learning method

Feng Zhou, Hongfei Lin, Zhihao Yang, 2013, 2013 IEEE International Conference on Bioinformatics and Biomedicine.

Detection and Extraction of Hot Topics on Chinese Microblogs

Hongfei Lin, Yuan Lin, Liang Yang, 2015, Cognitive Computation.

Protein Complexes Detection Based on Global Network Representation Learning

Feng Xia, Bo Xu, Yijia Zhang, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Disease named entity recognition from biomedical literature using a novel convolutional neural network

Hongfei Lin, Zhihao Yang, Lei Wang, 2017, BMC Medical Genomics.

Learning to Refine Expansion Terms for Biomedical Information Retrieval Using Semantic Resources

Hongfei Lin, Bo Xu, Yuan Lin, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Hypergraph Partition with Harmonic Average Top-N and PCA for Topic Detection

Fenglong Ma, Hongfei Lin, Hong Shen, 2010, 2010 3rd International Symposium on Parallel Architectures, Algorithms and Programming.

A document level neural model integrated domain knowledge for chemical-induced disease relations

Bo Xu, Xiaoxia Liu, Hongfei Lin, 2018, BMC Bioinformatics.

Heterographic pun identification model based on multi-dimensional semantic relationships

Liang Yang, Hongfei Lin, Linhong Xu, 2018 .

Learning to Rank with Query-level Semi-supervised Autoencoders

Hongfei Lin, Bo Xu, Yuan Lin, 2017, CIKM.

GPQ: Directly Optimizing Q-measure based on Genetic Programming

Ping Zhang, Hongfei Lin, Bo Xu, 2014, CIKM.

Supervised Learning Based Hypothesis Generation from Biomedical Literature

Hongfei Lin, Zhihao Yang, Shengtian Sang, 2015, BioMed research international.

NLPCC 2017 Shared Task Social Media User Modeling Method Summary by DUTIR_923

Hongfei Lin, Peng Fei, Kai Guo, 2017, NLPCC.

Extracting Emotion Causes Using Learning to Rank Methods From an Information Retrieval Perspective

Liang Yang, Bo Xu, Hongfei Lin, 2019, IEEE Access.

TREC 2005 Genomics Track Experiments at DUTAI

Hongfei Lin, Zhihao Yang, Baoyan Liu, 2005, TREC.

DUTIR in BioNLP-ST 2016: Utilizing Convolutional Network and Distributed Representation to Extract Complicate Relations

Honglei Li, Hongfei Lin, Zhihao Yang, 2016, BioNLP.

A Comprehensive Verification of Transformer in Text Classification

Hongfei Lin, Ran Bi, Liang Yang, 2019, CCL.

An Improved Web Page Ranking Algorithm Based on Temporal Information

Hongfei Lin, Xinyue Liu, Hong Shen, 2010 .

Multi-granularity Convolutional Neural Network with Feature Fusion and Refinement for User Profiling

Hongfei Lin, Michael M. Tadesse, Bo Xu, 2019, CCIR.

Multipath2vec: Predicting Pathogenic Genes via Heterogeneous Network Embedding

Yu Liu, Feng Xia, Lei Liu, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

NLPCC 2018 Shared Task User Profiling and Recommendation Method Summary by DUTIR_9148

Tong Liu, Hongfei Lin, Xiaoyu Chen, 2018, NLPCC.

DUTIR at TREC 2008 Relevance Feedback Track

Hongfei Lin, Zhihao Yang, Yuan Lin, 2008, TREC.

BioPPIExtractor: A protein-protein interaction extraction system for biomedical literature

Hongfei Lin, Zhihao Yang, Baodong Wu, 2009, Expert Syst. Appl..

Incorporating query constraints for autoencoder enhanced ranking

Hongfei Lin, Bo Xu, Yuan Lin, 2019, Neurocomputing.

An Improved HITS Algorithm Based on Page-query Similarity and Page Popularity

Hongfei Lin, Cong Zhang, Xinyue Liu, 2012, J. Comput..

An attention-based effective neural model for drug-drug interactions extraction

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2017, BMC Bioinformatics.

Where Are You Settling Down: Geo-locating Twitter Users Based on Tweets and Social Networks

Hongfei Lin, Shaowu Zhang, Kejiang Ren, 2012, AIRS.

How we collaborate: characterizing, modeling and predicting scientific collaborations

Hongfei Lin, Kun Ding, Kan Xu, 2015, Scientometrics.

Ranking SVM for multiple kernels output combination in protein-protein interaction extraction from biomedical literature

Hongfei Lin, Zhihao Yang, Nan Tang, 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Learning to capture contrast in sarcasm with contextual dual-view attention network

Hongfei Lin, Bo Xu, Lu Ren, 2021, Int. J. Mach. Learn. Cybern..

Identifying adverse drug reaction entities from social media with adversarial transfer learning model

Hongfei Lin, Bo Xu, Tongxuan Zhang, 2021, Neurocomputing.

A Semantic Network Encoder for Associated Fact Prediction

Hongfei Lin, Zhihao Yang, Zhizheng Wang, 2022, IEEE Transactions on Knowledge and Data Engineering.

Hyperspectral image classification with discriminative manifold broad learning system

Hongfei Lin, Xiaochao Fan, Shichang Sun, 2021, Neurocomputing.

Improving biomedical word representation with locally linear embedding

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2021, Neurocomputing.

Sentence representation with manifold learning for biomedical texts

Yan Wang, Hongfei Lin, Zhihao Yang, 2021, Knowl. Based Syst..

Dual Part-pooling Attentive Networks for Session-based Recommendation

Hongfei Lin, Bo Xu, Yufeng Diao, 2021, Neurocomputing.

Biomedical cross-sentence relation extraction via multihead attention and graph convolutional networks

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2021, Appl. Soft Comput..

Two-stage supervised ranking for emotion cause extraction

Hongfei Lin, Bo Xu, Kan Xu, 2021, Knowl. Based Syst..

Multifeature Fusion Attention Network for Suicide Risk Assessment Based on Social Media: Algorithm Development and Validation

Yijia Zhang, Hongfei Lin, Shaowu Zhang, 2021, JMIR medical informatics.

MultiMET: A Multimodal Dataset for Metaphor Understanding

Hongfei Lin, Liang Yang, Dongyu Zhang, 2021, ACL.

Hierarchical matching network for multi-turn response selection in retrieval-based chatbots

Hongfei Lin, Jian Wang, Yi-Jia Zhang, 2021, Soft Computing.

Hate Speech Detection Based on Sentiment Knowledge Sharing

Hongfei Lin, Yufeng Diao, Ge Ren, 2021, ACL.

Biomedical named entity recognition using BERT in the machine reading comprehension framework

Jian Wang, Hongfei Lin, Lei Wang, 2020, J. Biomed. Informatics.

Medical code prediction via capsule networks and ICD knowledge

Yijia Zhang, Hongfei Lin, Shaowu Zhang, 2021, BMC Medical Informatics and Decision Making.

Improving Human Happiness Analysis Based on Transfer Learning: Algorithm Development and Validation

Yijia Zhang, Hongfei Lin, Shaowu Zhang, 2021, JMIR medical informatics.

Adversarial transfer network with bilinear attention for the detection of adverse drug reactions from social media

Hongfei Lin, Bo Xu, Shaowu Zhang, 2021, Appl. Soft Comput..

Info-flow Enhanced GANs for Recommender

Hongfei Lin, Bo Xu, Kan Xu, 2021, SIGIR.

Word Emotion Disambiguation Based on Graph Ranking

Hongfei Lin, Shaowu Zhang, Liang Yang, 2014 .

Construction and application of affective metaphor corpus

Hongfei Lin, Bo Xu, Liang Yang, 2015 .

An uncertain model-based approach for identifying dynamic protein complexes in uncertain protein-protein interaction networks

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2017, BMC Genomics.

Cross-domain Sentiment Classification via Constructing Semantic Correlation

Hongfei Lin, Xiaocong Wei, W LiangYang, .

Enriching Music Information Retrieval Using Emotion Detection

Hongfei Lin, Wenfei Liu, Hongfei Lin, 2011 .

Transformer-Based Capsule Network For Stock Movement Prediction

Hongfei Lin, Bo Xu, Yufeng Diao, 2019 .

A Single Kernel-Based Approach to Extract Drug-Drug Interactions from Biomedical Literature

Yijia Zhang, Hongfei Lin, Zhihao Yang, 2012, PloS one.

Extracting Drug-Drug Interaction from the Biomedical Literature Using a Stacked Generalization-Based Approach

Hongfei Lin, Zhehuan Zhao, Zhihao Yang, 2013, PloS one.

Protein Complex Identification by Integrating Protein-Protein Interaction Evidence from Multiple Sources

Hongfei Lin, Bo Xu, Zhihao Yang, 2013, PloS one.