Qiwen Dong

发表

Prediction of protein local structures and folding fragments based on building‐block library

Xiaolong Wang, Lei Lin, Qiwen Dong, 2008, Proteins.

Protein ligand-specific binding residue predictions by an ensemble classifier

Kai Wang, Qiwen Dong, Xiuzhen Hu, 2016, BMC Bioinformatics.

Recognizing metal and acid radical ion-binding sites by integrating ab initio modeling with template-based transferals

Yang Zhang, Qiwen Dong, Jianyi Yang, 2016, Bioinform..

Identification of DNA-Binding Proteins by Combining Auto-Cross Covariance Transformation and Ensemble Learning

Xuan Liu, Bin Liu, Qiwen Dong, 2016, IEEE Transactions on NanoBioscience.

Nonintrusive-Sensing and Reinforcement-Learning Based Adaptive Personalized Music Recommendation

Yang Li, Daocheng Hong, Qiwen Dong, 2020, SIGIR.

Protein Inter-Residue Contacts Prediction: Methods, Performances and Applications

Ruqian Lu, Qiwen Dong, Xiaoyang Jing, 2019, Current Bioinformatics.

Gene ontology-based protein function prediction by using sequence composition information.

Shuigeng Zhou, Jihong Guan, Lei Deng, 2010, Protein and peptide letters.

Novel knowledge-based mean force potential at the profile level

Xiaolong Wang, Lei Lin, Qiwen Dong, 2006, BMC Bioinformatics.

Analysis and prediction of protein local structure based on structure alphabets

Xiaolong Wang, Lei Lin, Qiwen Dong, 2008, Proteins.

A Discriminative Method for Protein Remote Homology Detection Based on N-nary Profiles

Xiaolong Wang, Xuan Wang, Bin Liu, 2008, BIRD.

Amino Acid Encoding Methods for Protein Sequences: A Comprehensive Review and Assessment

Ruqian Lu, Qiwen Dong, Xiaoyang Jing, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Domain boundary prediction based on profile domain linker propensity index

Xiaolong Wang, Zhiming Xu, Lei Lin, 2006, Comput. Biol. Chem..

Sequence analysis Application of latent semantic analysis to protein remote homology detection

Xiaolong Wang, Lei Lin, Qiwen Dong, 2006 .

Sorting protein decoys by machine-learning-to-rank

Ruqian Lu, Kai Wang, Qiwen Dong, 2016, Scientific Reports.

Prediction of protein binding sites in protein structures using hidden Markov support vector machine

Xiaolong Wang, Xuan Wang, Buzhou Tang, 2009, BMC Bioinformatics.

MQAPRank: improved global protein model quality assessment by learning-to-rank

Qiwen Dong, Xiaoyang Jing, Q. Dong, 2017, BMC Bioinformatics.

RRCRank: a fusion method using rank strategy for residue-residue contact prediction

Ruqian Lu, Qiwen Dong, Xiaoyang Jing, 2017, BMC Bioinformatics.

Prediction of protein - protein interactions from primary sequences

Qiwen Dong, Xuan Liu, Shuigeng Zhou, 2010, Int. J. Data Min. Bioinform..

Novel Nonlinear Knowledge-Based Mean Force Potentials Based on Machine Learning

Shuigeng Zhou, Qiwen Dong, Q. Dong, 2011, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Prediction of protein-protein interaction sites using an ensemble method

Shuigeng Zhou, Jihong Guan, Lei Deng, 2009, BMC Bioinformatics.

Methods for optimizing the structure alphabet sequences of proteins

Xiaolong Wang, Lei Lin, Qiwen Dong, 2007, Comput. Biol. Medicine.

Improved protein residue-residue contacts prediction using learning-to-rank

Qiwen Dong, Xiaoyang Jing, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

A machine learning-based method for protein global model quality assessment

Shuigeng Zhou, Yufei Chen, Qiwen Dong, 2011, Int. J. Gen. Syst..

A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis

Xiaolong Wang, Xuan Wang, Bin Liu, 2008, BMC Bioinformatics.

Protein remote homology detection based on auto-cross covariance transformation

Xuan Liu, Qiwen Dong, Lijie Zhao, 2011, Comput. Biol. Medicine.

A Protein Classification Method Based on Latent Semantic Analysis*

Xiaolong Wang, Lei Lin, Minghui Li, 2005, 2005 IEEE Engineering in Medicine and Biology 27th Annual Conference.

Protein Remote Homology Detection by Combining Chou’s Pseudo Amino Acid Composition and Profile‐Based Protein Representation

Xiaolong Wang, Qingcai Chen, Bin Liu, 2013, Molecular informatics.

CSSSketch2Code: An Automatic Method to Generate Web Pages with CSS Style

Jun He, Qiwen Dong, Yi Han, 2018, ICAAI.

A new taxonomy-based protein fold recognition approach based on autocross-covariance transformation

Shuigeng Zhou, Jihong Guan, Qiwen Dong, 2009, Bioinform..

An improved genetic algorithm for statistical potential function design and protein structure prediction

Shuigeng Zhou, Jihong Guan, Xin Geng, 2012, Int. J. Data Min. Bioinform..

A conversation with Professor Ruqian Lu et al.

Fei Wang, Shuigeng Zhou, Ruqian Lu, 2012, SKDD.

Protein Remote Homology Detection Based on Binary Profiles

Xiaolong Wang, Lei Lin, Qiwen Dong, 2007, BIRD.

Identification of DNA-binding proteins by auto-cross covariance transformation

Bin Liu, Kai Wang, Xuan Liu, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins

Xiaolong Wang, Yi Guan, Lei Lin, 2007, BMC Bioinformatics.

Empirical Probability Functions Derived from Dihedral Angles for Protein Structure Prediction

Shuigeng Zhou, Jihong Guan, Xin Geng, 2009, 2009 Ninth IEEE International Conference on Bioinformatics and BioEngineering.

Improving Prediction of the Contact Numbers of Residues in Proteins from Primary Sequences

Shuigeng Zhou, Jihong Guan, Qiwen Dong, 2009, 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing.

Biological Language Model: Theory and Application

Aoying Zhou, Qiwen Dong, Xiuzhen Hu, 2020 .

Identifying the missing proteins in human proteome by biological language model

Kai Wang, Xuan Liu, Qiwen Dong, 2016, BMC Systems Biology.

Exploiting three kinds of interface propensities to identify protein binding sites

Xiaolong Wang, Xuan Wang, Bin Liu, 2009, Comput. Biol. Chem..

Predicting protein-ligand binding residues with deep convolutional neural networks

Xikun Wang, Daocheng Hong, Yifeng Cui, 2019, BMC Bioinformatics.

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection

Xiaolong Wang, Kuo-Chen Chou, Qingcai Chen, 2013, Bioinform..

Protein model quality assessment by learning-to-rank

Bin Liu, Xuan Liu, Qiwen Dong, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Identification of DNA-binding proteins by combining auto-cross covariance transformation and ensemble learning.

Qiwen Dong, Shanyi Wang, Bin Liu, 2016, IEEE transactions on nanobioscience.

An improved profile-level domain linker propensity index for protein domain boundary prediction.

Qiwen Dong, Bin Liu, Victor X Jin, 2011, Protein and peptide letters.