Kristof Engelen

发表

The Use of Mixed Models to Identify Differentially Expressed Genes when a Single Replicate per Biological Condition is Present

Kathleen Marchal, Geert Verbeke, Pushpike Jayantha Thilakarathne, 2009, BIOCOMP.

A calibration method for estimating absolute expression levels from microarray data

Kathleen Marchal, Bart De Moor, Bart Naudts, 2006, Bioinform..

The Condition‐Dependent Transcriptional Network in Escherichia coli

Kathleen Marchal, Julio Collado-Vides, Kristof Engelen, 2009, Annals of the New York Academy of Sciences.

INCLUSive: a web portal and service registry for microarray and regulatory sequence analysis

Kathleen Marchal, Bart De Moor, Yves Moreau, 2003, Nucleic Acids Res..

ViTraM: visualization of transcriptional modules.

Kathleen Marchal, Hong Sun, Bart De Moor, 2009 .

Identifying differentially expressed genes in the absence of replication

Kathleen Marchal, Geert Verbeke, Dan Lin, 2013, Int. J. Bioinform. Res. Appl..

Evaluation of time profile reconstruction from complex two-color microarray designs

Kathleen Marchal, Gilles Bernot, Kristof Engelen, 2008, BMC Bioinformatics.

Discovering Candidates for Gene Network Expansion by Distributed Volunteer Computing

Enrico Blanzieri, Paolo Morettin, Francesco Asnicar, 2015, 2015 IEEE Trustcom/BigDataSE/ISPA.

A Nonlinear Mixed-Effects Model for Estimating Calibration Intervals for Unknown Concentrations in Two-Color Microarray Data with Spike-Ins

Kathleen Marchal, Geert Verbeke, Kristof Engelen, 2009, Statistical applications in genetics and molecular biology.

Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome

Matteo Brilli, Alessio Mengoni, Marco Bazzicalupo, 2015, PLoS Comput. Biol..

Systems Biology. Come Forth

Bart De Moor, Kristof Engelen, Bert Coessens, 2007 .

COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses

Chiara Romualdi, Luca Bianco, Julio Collado-Vides, 2015, Nucleic Acids Res..

Conditional Random Fields Feature Subset Selection Based on Genetic Algorithms for Phosphorylation Site Prediction

Kathleen Marchal, Thanh Hai Dang, Kristof Engelen, 2009, 2009 International Conference on Knowledge and Systems Engineering.

Validation of ChIP-chip targets by query-driven biclustering

Kathleen Marchal, Kristof Engelen, Riet De Smet, 2009 .

Cross-platform expression compendia

Kathleen Marchal, Qiang Fu, Kristof Engelen, 2008 .

Layout and Post-Processing of Transcriptional Modules

Kathleen Marchal, Hong Sun, Bart De Moor, 2009, 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing.

Query-based biclustering of gene expression data using Probabilistic Relational Models

Lore Cloots, Kathleen Marchal, Hui Zhao, 2011, BMC Bioinformatics.

First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_

Kristof Engelen, Paolo Sonego, Marco Moretto, 2019, BMC Bioinformatics.

CALIB: a Bioconductor package for estimating absolute expression levels from two-color microarray data

Kathleen Marchal, Hui Zhao, Bart De Moor, 2007, Bioinform..

Use of structural DNA properties for the prediction of transcription-factor binding sites in Escherichia coli

Kathleen Marchal, Thanh Hai Dang, Yan Wu, 2010, Nucleic Acids Res..

Running head: A Calibration Method for Microarray Data

Kathleen Marchal, Bart De Moor, Bart De Moor, 2006 .

ModuleVisualization: a tool for visualizing gene module network

Kathleen Marchal, Hong Sun, Bart De Moor, 2008 .

Discovering Transcriptional Modules from Motif, Chip-Chip and Microarray Data

Nello Cristianini, Kathleen Marchal, Bart De Moor, 2004, Pacific Symposium on Biocomputing.

COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia

Kathleen Marchal, Qiang Fu, Luca Bianco, 2013, Nucleic Acids Res..

Common-Mode Voltage Generation by Grid-Connected Inverters: Problems and Solution

Ronnie Belmans, Johan Driesen, Kristof Engelen, 2008 .

Discovering Candidates for Gene Network Expansion by Distributed Volunteer Computing

Enrico Blanzieri, Paolo Morettin, Francesco Asnicar, 2015, TrustCom 2015.

MARAN: Normalizing Micro-array Data

Kathleen Marchal, Bart De Moor, Kristof Engelen, 2003, Bioinform..

Facilitating ChIP-chip-based reconstruction of regulatory networks by combining omics data

Kathleen Marchal, Kristof Engelen, Riet De Smet, 2008 .

Joint mapping of genes and conditions via multidimensional unfolding analysis

Kathleen Marchal, Willem J. Heiser, Iven Van Mechelen, 2007, BMC Bioinformatics.

Identifying Common Structural DNA Properties in Transcription Factor Binding Site Sets of the LacI-GalR Family

Kathleen Marchal, Kristof Engelen, Pieter Meysman, 2013 .

Delineation of the Salmonella enterica Serovar Typhimurium HilA Regulon through Genome-Wide Location and Transcript Analysis

Kathleen Marchal, Hui Zhao, Kristof Engelen, 2007, Journal of bacteriology.

MARAN : normalizing microarray data

Kathleen Marchal, Bart De Moor, Kristof Engelen, 2003 .

Insights into the Role of the Berry-Specific Ethylene Responsive Factor VviERF045

Kristof Engelen, Claudio Moser, Domenico Masuero, 2016, Frontiers in plant science.

COMPARISON OF DIFFERENT METHODOLOGIES TO IDENTIFY DIFFERENTIALLY EXPRESSED GENES IN TWO-SAMPLE cDNA MICROARRAYS

Kathleen Marchal, Bart De Moor, Stein Aerts, 2002 .

PKA and Sch9 control a molecular switch important for the proper adaptation to nutrient availability

Kathleen Marchal, Janick Mathys, Kristof Engelen, 2004, Molecular microbiology.

ProBic: identification of overlapping biclusters using Probabilistic Relational Models, applied to simulated gene expression data.

Kathleen Marchal, Hui Zhao, Bart De Moor, 2001 .

VESPUCCI: Exploring Patterns of Gene Expression in Grapevine

Kristof Engelen, Claudio Moser, Marco Moretto, 2016, Front. Plant Sci..

Genome-wide expression analysis reveals TORC1-dependent and -independent functions of Sch9.

Kathleen Marchal, Kristof Engelen, J. Winderickx, 2008, FEMS yeast research.

Pacific Symposium on Biocomputing (PSB)

Nello Cristianini, Kathleen Marchal, Kristof Engelen, 2005 .

Alternative experimental design with an applied normalization scheme can improve statistical power in 2D-DIGE experiments.

Kathleen Marchal, Kristof Engelen, Kris Laukens, 2010, Journal of proteome research.

DNA Structural Properties in the Classification of Genomic Transcription Regulation Elements

Kathleen Marchal, Kristof Engelen, Pieter Meysman, 2012, Bioinformatics and biology insights.

Expression profiling to predict the clinical behaviour of ovarian cancer fails independent evaluation

Olivier Gevaert, Dirk Timmerman, Kristof Engelen, 2008, BMC Cancer.

Expression Divergence between Escherichia coli and Salmonella enterica serovar Typhimurium Reflects Their Lifestyles

Kathleen Marchal, Kristof Engelen, Pieter Meysman, 2013, Molecular biology and evolution.