Jaroslaw Zola

发表

Constructing Gene Regulatory Networks on Clusters of Cell Processors

Srinivas Aluru, Jaroslaw Zola, Abhinav Sarje, 2009, 2009 International Conference on Parallel Processing.

Jaroslaw Zola, J. Zola, 2014, 2014 IEEE International Parallel & Distributed Processing Symposium Workshops.

Error Metrics for Learning Reliable Manifolds from Streaming Data

Varun Chandola, Jaroslaw Zola, Nils Napp, 2017, SDM.

CaLi, efficient library for cache implementation

Jaroslaw Zola, 2004, Proceedings of the Fifth Mexican International Conference in Computer Science, 2004. ENC 2004..

ParBaum: Large-Scale Maximum Likelihood-Based Phylogenetic Analyses

Srinivas Aluru, Alexandros Stamatakis, Michael Ott, 2009 .

Large-Scale metagenomic sequence Clustering on Map-Reduce Clusters

Srinivas Aluru, Xiao Yang, Jaroslaw Zola, 2013, J. Bioinform. Comput. Biol..

Cache-Based Parallelization of Multiple Sequence Alignment Problem

Denis Trystram, Jaroslaw Zola, Gilles Parmentier, 2004, Euro-Par.

Scalable Exact Parent Sets Identification in Bayesian Networks Learning with Apache Spark

Jaroslaw Zola, Subhadeep Karan, J. Zola, 2017, 2017 IEEE 24th International Conference on High Performance Computing (HiPC).

Identifying Taxonomic Units in Metagenomic DNA Streams

Jaroslaw Zola, Vicky Zheng, Ahmet Erdem Sariyuce, 2020, bioRxiv.

Parallel information theory based construction of gene regulatory networks

Srinivas Aluru, Jaroslaw Zola, Maneesha Aluru, 2008, HiPC'08.

Scalable Manifold Learning for Big Data with Apache Spark

Jaroslaw Zola, Frank Schoeneman, 2018, 2018 IEEE International Conference on Big Data (Big Data).

Multiple Sequence Alignment and Phylogenetic Inference

Denis Trystram, Jaroslaw Zola, J. Zola, 2007, Grid Computing for Bioinformatics and Computational Biology.

EPL-Julia the High-Performance Library for Evolutionary Computations

Roman Wyrzykowski, Jaroslaw Zola, 2001, PPAM.

Large scale multiple sequence alignment with simultaneous phylogeny inference

Denis Trystram, Jaroslaw Zola, Gilles Parmentier, 2006, J. Parallel Distributed Comput..

Large-scale phylogenetic analysis on current HPC architectures

Srinivas Aluru, Alexandros Stamatakis, Michael Ott, 2008, Sci. Program..

Resolving read assignment ambiguities in metagenomic clustering

Srinivas Aluru, Jaroslaw Zola, R. Nihalani, 2013, BICoB 2013.

Parallel Framework for Dimensionality Reduction of Large-Scale Datasets

Srinivas Aluru, Baskar Ganapathysubramanian, Jaroslaw Zola, 2015, Sci. Program..

Parallel Information-Theory-Based Construction of Genome-Wide Gene Regulatory Networks

Srinivas Aluru, Jaroslaw Zola, Abhinav Sarje, 2010, IEEE Transactions on Parallel and Distributed Systems.

Privacy Preserving Analytics on Distributed Medical Data pdf

Marina Blanton, Ah Reum Kang, Jaroslaw Zola, 2018, ArXiv.

Parallel Computing for Gene Networks Reverse Engineering

Jaroslaw Zola, J. Zola, 2014, Approaches in Integrative Bioinformatics.

Parallel multiple sequence alignment with local phylogeny search by simulated annealing

Andrei Tchernykh, Carlos A. Brizuela, Denis Trystram, 2006, Proceedings 20th IEEE International Parallel & Distributed Processing Symposium.

Parallel globally optimal structure learning of Bayesian networks

Srinivas Aluru, Jaroslaw Zola, Olga Nikolova, 2013, J. Parallel Distributed Comput..

Grid Portal for Multiple Sequence Alignment

Jaroslaw Zola, Piotr Dziubecki, J. Zola, 2007 .

HiCOMB Introduction and Committees

Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman, 2016, 2016 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW).

Parallel Multiple Sequence Alignment with Decentralized Cache Support

Denis Trystram, Jaroslaw Zola, 2005, Euro-Par.

Encyclopedia of Parallel Computing

Srinivas Aluru, Jaroslaw Zola, 2011 .

Parallel server for multiple sequence alignment

Jaroslaw Zola, J. Zola, 2005 .

PARALLEL-TCOFFEE: A parallel multiple sequence aligner

Srinivas Aluru, Xiao Yang, Jaroslaw Zola, 2007, PDCS.

Federated Computing for the Masses--Aggregating Resources to Tackle Large-Scale Engineering Problems

Yu Xie, Baskar Ganapathysubramanian, Manish Parashar, 2014, Computing in Science & Engineering.

Entropy-Isomap: Manifold Learning for High-dimensional Dynamic Processes

Olga Wodo, Varun Chandola, Jaroslaw Zola, 2018, 2018 IEEE International Conference on Big Data (Big Data).

Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L

Srinivas Aluru, Alexandros Stamatakis, Michael Ott, 2007, Proceedings of the 2007 ACM/IEEE Conference on Supercomputing (SC '07).

Solving All-Pairs Shortest-Paths Problem in Large Graphs Using Apache Spark

Jaroslaw Zola, Frank Schoeneman, J. Zola, 2019, ICPP.

A software framework for data dimensionality reduction: application to chemical crystallography

Baskar Ganapathysubramanian, Krishna Rajan, Jaroslaw Zola, 2014, Integrating Materials and Manufacturing Innovation.

Applications and Challenges of Real-time Mobile DNA Analysis pdf

Steven Y. Ko, Jaroslaw Zola, Lauren M. Sassoubre, 2017, HotMobile.

Fast Counting in Machine Learning Applications

Jaroslaw Zola, Grant Iraci, Matthew Eichhorn, 2018, UAI.

Exact structure learning of Bayesian networks by optimal path extension

Jaroslaw Zola, Subhadeep Karan, J. Zola, 2016, 2016 IEEE International Conference on Big Data (Big Data).

Performance of All-Pairs Shortest-Paths Solvers with Apache Spark pdf

Jaroslaw Zola, Frank Schoeneman, 2019, ArXiv.

A parallel algorithm for exact Bayesian network inference

Srinivas Aluru, Jaroslaw Zola, Olga Nikolova, 2009, 2009 International Conference on High Performance Computing (HiPC).

HiCOMB Introduction

Srinivas Aluru, David A. Bader, Jaroslaw Zola, 2011, 2011 IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum.

Scientific Computing with Multicore and Accelerators

Srinivas Aluru, Jaroslaw Zola, Abhinav Sarje, 2010 .

Systems Biology, Network Inference in

Srinivas Aluru, Jaroslaw Zola, 2011, Encyclopedia of Parallel Computing.

Accelerating Pairwise Computations on Cell Processors

Srinivas Aluru, Jaroslaw Zola, Abhinav Sarje, 2011, IEEE Transactions on Parallel and Distributed Systems.

Large-scale phylogenetic analysis on current HPC architectures

Srinivas Aluru, Alexandros Stamatakis, Michael Ott, 2008 .

Grid portal formultiple sequence alibnment

Jaroslaw Zola, Piotr Dziubecki, J. Zola, 2007 .

Pairwise Computations on the Cell Processor

Srinivas Aluru, Jaroslaw Zola, Abhinav Sarje, 2010, Scientific Computing with Multicore and Accelerators.