Sebastian D. Mackowiak

发表

doRiNA: a database of RNA interactions in post-transcriptional regulation

Christoph Dieterich, Nikolaus Rajewsky, Jonas Maaskola, 2011, Nucleic Acids Res..

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

Sebastian D. Mackowiak, N. Rajewsky, M. Friedländer, 2011, Nucleic acids research.

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project

Raymond K. Auerbach, Kevin Y. Yip, Stefan R. Henz, 2010, Science.

The Landscape of C. elegans 3′UTRs

Sebastian D. Mackowiak, Emily K. Mis, F. Piano, 2010, Science.

Global profiling of miRNAs and the hairpin precursors: insights into miRNA processing and novel miRNA discovery

Christoph Dieterich, Na Li, Andreas Gogol-Döring, 2013, Nucleic acids research.

Extensive identification and analysis of conserved small ORFs in animals

Sebastian D. Mackowiak, B. Obermayer, N. Rajewsky, 2015, Genome Biology.

Comprehensive identification and characterization of conserved small ORFs in animals

Sebastian D. Mackowiak, B. Obermayer, N. Rajewsky, 2015, bioRxiv.

Circular RNAs are a large class of animal RNAs with regulatory potency

Sebastian D. Mackowiak, Antigoni L Elefsinioti, C. Kocks, 2013, Nature.

Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation

Nikolaus Rajewsky, Charles E. Vejnar, Benedikt Obermayer, 2014, The EMBO journal.

Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells

Sebastian D. Mackowiak, M. Friedländer, S. Catuara-Solarz, 2020, Nature communications.

Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells

Sebastian D. Mackowiak, M. Friedländer, S. Catuara-Solarz, 2019, Nature Communications.

The SWI/SNF subunits BRG1 affects alternative splicing by changing RNA binding factor interactions with RNA

Sebastian D. Mackowiak, M. Friedländer, A. Ö. Farrants, 2019, bioRxiv.

Selective Mediator-dependence of cell type-specifying transcription

Sebastian D. Mackowiak, P. Cramer, J. Bradner, 2020, Nature Genetics.

An inventory of yeast proteins associated with nucleolar and ribosomal components

Sebastian D. Mackowiak, M. Vingron, E. Staub, 2006, Genome Biology.

Discovery and characterization of LNCSOX17 as an essential regulator in human endoderm formation

Sebastian D. Mackowiak, J. Rinn, R. Maehr, 2022, bioRxiv.

De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics.

Christoph Dieterich, Wei Chen, Nikolaus Rajewsky, 2011, Genome research.

T-REX17 is a transiently expressed non-coding RNA essential for human endoderm formation

Sebastian D. Mackowiak, J. Rinn, R. Maehr, 2023, eLife.

Extensive identification and analysis of conserved small ORFs in animals

Sebastian D. Mackowiak, B. Obermayer, N. Rajewsky, 2015, Genome Biology.

Unblending of Transcriptional Condensates in Human Repeat Expansion Disease

Sebastian D. Mackowiak, S. Mundlos, H. Ewers, 2020, Cell.

Identification of Novel and Known miRNAs in Deep‐Sequencing Data with miRDeep2

Sebastian D. Mackowiak, Sebastian D Mackowiak, 2011, Current protocols in bioinformatics.

Specific microRNAs Regulate Heat Stress Responses in Caenorhabditis elegans

Sebastian D. Mackowiak, Agnieszka Podolska, R. Pocock, 2015, Scientific Reports.

modENCODE Project Genome by the Caenorhabditis elegans Integrative Analysis of the

Raymond K. Auerbach, Kevin Y. Yip, Stefan R. Henz, 2011 .

The SWI/SNF subunit BRG1 affects alternative splicing by changing RNA binding factor interactions with nascent RNA

Sebastian D. Mackowiak, M. Friedländer, N. Visa, 2022, Molecular Genetics and Genomics.

SSAM-lite: A Light-Weight Web App for Rapid Analysis of Spatially Resolved Transcriptomics Data

Sebastian D. Mackowiak, R. Eils, Naveed Ishaque, 2021, bioRxiv.

Global hypomethylation in childhood asthma identified by genome‐wide DNA‐methylation sequencing preferentially affects enhancer regions

Sebastian D. Mackowiak, C. Plass, J. Heinrich, 2023, Allergy.

A Fluorophore Fusion Construct of Human Profilin I with Non-Compromised Poly(L-Proline) Binding Capacity Suitable for Imaging.

Sebastian D. Mackowiak, M. Friedländer, R. Karlsson, 2017, Journal of molecular biology.

Genome-wide DNA methylation sequencing identifies epigenetic perturbations in the upper airways under long-term exposure to moderate levels of ambient air pollution.

Sebastian D. Mackowiak, S. Trump, Naveed Ishaque, 2023, Environmental research.

Circular RNAs are a large class of animal RNAs with regulatory potency

Sebastian D. Mackowiak, Antigoni L Elefsinioti, C. Kocks, 2013, Nature.

De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics.

Dominic P. Tolle, Sebastian D. Mackowiak, C. Dieterich, 2011, Genome research.

Comprehensive identification and characterization of conserved small ORFs in animals

Sebastian D. Mackowiak, B. Obermayer, N. Rajewsky, 2015, bioRxiv.