Hidewaki Nakagawa

发表

Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments

Wan Choi, Oliver Hofmann, Roland Eils, 2017, bioRxiv.

Publisher Correction: IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis

Tatsuhiko Tsunoda, Kouichi Ozaki, Shujiro Okuda, 2018, Scientific Reports.

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Jun Yu, Chen Hong, Ken Chen, 2020, Nature.

Butler enables rapid cloud-based analysis of thousands of human genomes

Robert L. Grossman, Oliver Hofmann, Roland Eils, 2020, Nature Biotechnology.

Neoantimon: a multifunctional R package for identification of tumor-specific neoantigens

Satoru Miyano, Atsushi Niida, Rui Yamaguchi, 2020, Bioinform..

ALPHLARD-NT: Bayesian Method for Human Leukocyte Antigen Genotyping and Mutation Calling through Simultaneous Analysis of Normal and Tumor Whole-Genome Sequence Data

Satoru Miyano, Seiya Imoto, Takuya Moriyama, 2019, J. Comput. Biol..

Novel Calmodulin Mutations Associated With Congenital Arrhythmia Susceptibility

Takeshi Tsuchiya, Thomas Meitinger, Tatsuhiko Tsunoda, 2014, Circulation. Cardiovascular genetics.

Whole-genome sequencing and comprehensive variant analysis of a Japanese individual using massively parallel sequencing

Masao Nagasaki, Satoru Miyano, Yusuke Nakamura, 2010, Nature Genetics.

Genome-wide cDNA microarray analysis of gene expression profiles in pancreatic cancers using populations of tumor cells and normal ductal epithelial cells selected for purity by laser microdissection

Yusuke Nakamura, Tatsuhiko Tsunoda, Osamu Ishikawa, 2004, Oncogene.

A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer

Peter Kraft, Jenny Donovan, Anssi Auvinen, 2014, Nature Genetics.

Development of Serum Glycoproteomic Profiling Technique; Simultaneous Identification of Glycosylation Sites and Site-Specific Quantification of Glycan Structure Changes*

Yusuke Nakamura, Naomi Saichi, Hidewaki Nakagawa, 2010, Molecular & Cellular Proteomics.

Comprehensive analysis of indels in whole-genome microsatellite regions and microsatellite instability across 21 cancer types

Satoru Miyano, Yuichi Shiraishi, Seiya Imoto, 2018, bioRxiv.

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

Roland Eils, Pablo H. Hennings-Yeomans, Paul T. Spellman, 2014, bioRxiv.

A practical method to detect SNVs and indels from whole genome and exome sequencing data

Tatsuhiko Tsunoda, Daichi Shigemizu, Hidewaki Nakagawa, 2013, Scientific Reports.

Molecular features of hormone-refractory prostate cancer cells by genome-wide gene expression profiles.

Yusuke Nakamura, Tatsuhiko Tsunoda, Hidewaki Nakagawa, 2007, Cancer research.

Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing

Ken Chen, Mark Gerstein, Satoru Miyano, 2018, Nature Genetics.

Identification of a Novel Tumor-Associated Antigen, Cadherin 3/P-Cadherin, as a Possible Target for Immunotherapy of Pancreatic, Gastric, and Colorectal Cancers

Yusuke Nakamura, Hidewaki Nakagawa, Hideo Baba, 2008, Clinical Cancer Research.

Novel 5 alpha-steroid reductase (SRD5A3, type-3) is overexpressed in hormone-refractory prostate cancer.

Yusuke Nakamura, Hidewaki Nakagawa, Kenji Tamura, 2008, Cancer science.

Large-scale association analysis in Asians identifies new susceptibility loci for prostate cancer

Chao Qin, Fang Liu, Qiang Ding, 2015, Nature Communications.

Novel lipogenic enzyme ELOVL7 is involved in prostate cancer growth through saturated long-chain fatty acid metabolism.

Yusuke Nakamura, Hidewaki Nakagawa, Kenji Tamura, 2009, Cancer research.

Down-regulation of RAB6KIFL/KIF20A, a kinesin involved with membrane trafficking of discs large homologue 5, can attenuate growth of pancreatic cancer cell.

Yusuke Nakamura, Osamu Ishikawa, Hidewaki Nakagawa, 2005, Cancer research.

Mismatch Repair Gene PMS2

Hidewaki Nakagawa, Heather Hampel, Wendy L Frankel, 2004, Cancer Research.

Germline determinants of the somatic mutation landscape in 2,642 cancer genomes

Gunnar Rätsch, Mark Gerstein, Li Ding, 2017, bioRxiv.

Novel 5α‐steroid reductase (SRD5A3, type‐3) is overexpressed in hormone‐refractory prostate cancer

Yusuke Nakamura, Hidewaki Nakagawa, Kenji Tamura, 2007 .

IRX4 at 5p15 suppresses prostate cancer growth through the interaction with vitamin D receptor, conferring prostate cancer susceptibility.

Yusuke Nakamura, Tatsuhiko Tsunoda, Daichi Shigemizu, 2012, Human molecular genetics.

Oncogenic role of KIAA0101 interacting with proliferating cell nuclear antigen in pancreatic cancer.

Yusuke Nakamura, Osamu Ishikawa, Hidewaki Nakagawa, 2007, Cancer research.