Sandra Reuter

Roary: rapid large-scale prokaryote pan genome analysis

Andrew J. Page, Daniel Falush, Julian Parkhill, 2015, bioRxiv.

Comparison of bacterial genome assembly software for MinION data and their applicability to medical microbiology

Julian Parkhill, Martin Hunt, Kim Judge, 2016, bioRxiv.

Genomic analysis of carbapenemase-encoding plasmids from Klebsiella pneumoniae across Europe highlights three major patterns of dissemination

Anna E. Sheppard, Julian Parkhill, David M. Aanensen, 2019, bioRxiv.

Rapid Whole-Genome Sequencing for Investigation of a Suspected Tuberculosis Outbreak

Stephen D. Bentley, Julian Parkhill, Sandra Reuter, 2012, Journal of Clinical Microbiology.

Parallel independent evolution of pathogenicity within the genus Yersinia

Jukka Corander, Lars Barquist, Julian Parkhill, 2014, Proceedings of the National Academy of Sciences.

Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes

Julian Parkhill, Simon R. Harris, Kim Judge, 2015, The Journal of antimicrobial chemotherapy.

Directional gene flow and ecological separation in Yersinia enterocolitica

Jukka Corander, Alan McNally, Sandra Reuter, 2015, Microbial genomics.

Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community

Francesc Coll, Julian Parkhill, Ewan M. Harrison, 2017, Science Translational Medicine.

Roary: Rapid large-scale prokaryote pan genome analysis

Julian Parkhill, Martin Hunt, Jacqueline A. Keane, 2015, bioRxiv.