Sarah A. Killcoyne

Adaptable data management for systems biology investigations

Ilya Shmulevich, John Boyle, Hector Rovira, 2009, BMC Bioinformatics.

T1DBase: integration and presentation of complex data for type 1 diabetes research

James E. Allen, Nathan Goodman, Christopher C. Cavnor, 2006, Nucleic Acids Res..

Managing Chaos: Lessons Learned Developing Software in the Life Sciences

John Boyle, Sarah A. Killcoyne, 2009, Computing in Science & Engineering.

FIGG: Simulating populations of whole genome sequences for heterogeneous data analyses

Sarah A. Killcoyne, Antonio del Sol, 2013, BMC Bioinformatics.

An Integration Architecture Designed to Deal with the Issues of Biological Scope, Scale and Complexity

Ilya Shmulevich, John Boyle, Hector Rovira, 2010, DILS.

Systems biology driven software design for the research enterprise

Ilya Shmulevich, John Boyle, Christopher C. Cavnor, 2007, BMC Bioinformatics.

Howdah - A Flexible Pipeline Framework for Analyzing Genomic Data

Mike O'Leary, Ilya Shmulevich, Hector Rovira, 2010, 2010 IEEE Second International Conference on Cloud Computing Technology and Science.

SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments

Stephen A. Ramsey, Ilya Shmulevich, John Boyle, 2009, BMC Bioinformatics.

Methods for visual mining of genomic and proteomic data atlases

John Boyle, Sarah A. Killcoyne, Ryan Bressler, 2012, BMC Bioinformatics.

Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework

Henning Hermjakob, Eric W. Deutsch, John Boyle, 2012, BMC Bioinformatics.

Interfaces to PeptideAtlas: a case study of standard data access systems

Eric W. Deutsch, John Boyle, Sarah A. Killcoyne, 2012, Briefings Bioinform..