Oriol Fornes

发表

Knowledge environments representing molecular entities for the virtual physiological human

Martin Hofmann-Apitius, Juliane Fluck, Stefan Schulz, 2008, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

David J. Arenillas, Wyeth W. Wasserman, Boris Lenhard, 2017, Nucleic acids research.

Gene expression models based on transcription factor binding events confer insight into functional cis-regulatory variants

Wenqiang Shi, Oriol Fornes, Wyeth W Wasserman, 2018, Bioinform..

SPServer: split-statistical potentials for the analysis of protein structures and protein–protein interactions

Oriol Fornes, Jaume Bonet, Narcis Fernandez-Fuentes, 2021, BMC Bioinform..

On the prediction of DNA-binding preferences of C2H2-ZF domains using structural models: application on human CTCF

Oriol Fornes, Jaume Bonet, Narcis Fernandez-Fuentes, 2020 .

Bioinformatics design of MiniPromoters for targeted delivery of expression

David J. Arenillas, Wyeth W. Wasserman, Oriol Fornes, 2018 .

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

David J. Arenillas, Wyeth W. Wasserman, Chih-Yu Chen, 2015, Nucleic Acids Res..

ModLink+: improving fold recognition by using protein-protein interactions

Marc A. Martí-Renom, Baldomero Oliva, Jordi Espadaler, 2009, Bioinform..

InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research.

Oriol Fornes, Joan Planas-Iglesias, Jaume Bonet, 2016, Biochemical Society transactions.

JASPAR TFBS LOLA databases - Part 2

Wyeth W. Wasserman, Boris Lenhard, Rafael Riudavets Puig, 2021 .

JASPAR TFBS LOLA databases - Part 1

Wyeth W. Wasserman, Boris Lenhard, Rafael Riudavets Puig, 2021 .

JASPAR: an open-access database of transcription factor binding profiles

David J. Arenillas, Wyeth W. Wasserman, Boris Lenhard, 2018 .

On the use of knowledge-based potentials for the evaluation of models of protein-protein, protein-DNA, and protein-RNA interactions.

Oriol Fornes, Jaume Bonet, Javier Garcia-Garcia, 2014, Advances in protein chemistry and structural biology.