Henry H. N. Lam

发表

Multi-resolution LC-MS images alignment using dynamic time warping and Kullback-Leibler distance

Albert C. S. Chung, William K. H. Wu, Henry H. N. Lam, 2012, 2012 19th IEEE International Conference on Image Processing.

A draft map of the human proteome

Gary D Bader, Christopher J. Mitchell, Patrick G. Shaw, 2014, Nature.

Phosphoproteomic Analysis Reveals Interconnected System-Wide Responses to Perturbations of Kinases and Phosphatases in Yeast

Patrick G. A. Pedrioli, Henry H. N. Lam, G. Nolan, 2010, Science Signaling.

Absolute quantification of microbial proteomes at different states by directed mass spectrometry

Henry H. N. Lam, R. Aebersold, M. Beck, 2011, Molecular systems biology.

PhosphoPep—a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

Ruedi Aebersold, Christian Panse, Ralph Schlapbach, 2007, Molecular systems biology.

Development and validation of a spectral library searching method for peptide identification from MS/MS

Nichole L. King, Henry H. N. Lam, R. Aebersold, 2007, Proteomics.

iProphet: Multi-level Integrative Analysis of Shotgun Proteomic Data Improves Peptide and Protein Identification Rates and Error Estimates*

Natalie I. Tasman, David D. Shteynberg, Henry H. N. Lam, 2011, Molecular & Cellular Proteomics.

Building and Searching Tandem Mass Spectral Libraries for Peptide Identification*

Henry H. N. Lam, 2011, Molecular & Cellular Proteomics.

A database of mass spectrometric assays for the yeast proteome

Henry H. N. Lam, R. Aebersold, J. Ranish, 2008, Nature Methods.

Spectral archives: a vision for future proteomics data repositories

Henry H. N. Lam, 2011, Nature Methods.

Denoising peptide tandem mass spectra for spectral libraries: a Bayesian approach.

Henry H. N. Lam, Wenguang Shao, 2013, Journal of proteome research.

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

Henry H. N. Lam, R. Aebersold, E. Deutsch, 2008, EMBO reports.

A guided tour of the Trans‐Proteomic Pipeline

Natalie I. Tasman, David D. Shteynberg, Daniel B. Martin, 2010, Proteomics.

An open-source computational and data resource to analyze digital maps of immunopeptidomes

Alessandro Sette, Ruedi Aebersold, Lucia Espona, 2015, eLife.

Tandem mass spectral libraries of peptides and their roles in proteomics research.

Henry Lam, Wenguang Shao, Henry H. N. Lam, 2017, Mass spectrometry reviews.

A semi‐empirical approach for predicting unobserved peptide MS/MS spectra from spectral libraries

Henry Lam, Henry H. N. Lam, Yingwei Hu, 2011, Proteomics.

A High-Resolution LC-MS-Based Secondary Metabolite Fingerprint Database of Marine Bacteria

Henry H. N. Lam, Jijie Wang, P. Qian, 2014, Scientific Reports.

Chromosome-centric Human Proteome Project (C-HPP): Chromosome 12.

Henry H. N. Lam, A. Pandey, R. Sirdeshmukh, 2014, Journal of proteome research.

Proteomic response of methicillin-resistant S. aureus to a synergistic antibacterial drug combination: a novel erythromycin derivative and oxacillin

Henry H. N. Lam, P. Qian, Yingwei Hu, 2016, Scientific Reports.

A comprehensive proteomics study on edible bird’s nest using new monoclonal antibody approach and application in quality control

Henry H. N. Lam, T. Dong, K. Tsim, 2018 .

Fruit of Ziziphus jujuba (Jujube) at two stages of maturity: distinction by metabolic profiling and biological assessment.

Henry H. N. Lam, T. Dong, K. Tsim, 2015, Journal of agricultural and food chemistry.

Direct glycan structure determination of intact N-linked glycopeptides by low-energy collision-induced dissociation tandem mass spectrometry and predicted spectral library searching.

Henry H. N. Lam, Yingwei Hu, Pei-Jing Pai, 2016, Analytica chimica acta.

Label-free quantitative proteomics analysis of antibiotic response in Staphylococcus aureus to oxacillin.

Henry H. N. Lam, Yingwei Hu, Xiaofen Liu, 2014, Journal of proteome research.

Susceptibility to false discovery in biomarker research using liquid chromatography–high resolution mass spectrometry based untargeted metabolomics profiling

Henry H. N. Lam, Qing‐Yu He, Xing-wang Zhou, 2021, Clinical and translational medicine.

Spectral library searching for peptide identification in proteomics

Henry H. N. Lam, 2012 .

DPHL: A DIA Pan-human Protein Mass Spectrometry Library for Robust Biomarker Discovery

Henry H. N. Lam, R. Aebersold, Yue Xuan, 2020, bioRxiv.

Application of proteomics in studying bacterial persistence

Henry H. N. Lam, Jordy Evan Sulaiman, 2019, Expert review of proteomics.

A repository of assays to quantify 10,000 human proteins by SWATH-MS

Eric W. Deutsch, Ruedi Aebersold, Yansheng Liu, 2014, Scientific Data.

Metabonomic Analysis of Water Extracts from Different Angelica Roots by 1H-Nuclear Magnetic Resonance Spectroscopy

Henry H. N. Lam, H. Keun, Chung-Ho E Lau, 2014, Molecules.

Proteomic analysis of thioproline misincorporation in Escherichia coli.

Henry H. N. Lam, W. Chan, Long Wu, 2020, Journal of proteomics.

Proteomining-Based Elucidation of Natural Product Biosynthetic Pathways in Streptomyces

Henry H. N. Lam, P. Qian, Yi Yu, 2022, Frontiers in Microbiology.

The Osteogenic Function of Danggui Buxue Tang, a Herbal Decoction Containing Astragali Radix and Angelicae Sinensis Radix, Is Optimized by Boiling the Two Herbs Together: Signaling Analyses Revealed by Systems Biology

Henry H. N. Lam, K. Tsim, A. X. Yu, 2021, Processes.

Antibody stabilization for thermally accelerated deep immunostaining

Leo Y. C. Yan, Henry H. N. Lam, S. Wong, 2022, Nature Methods.

Mode of action of elasnin as biofilm formation eradicator of methicillin-resistant Staphylococcus aureus

Henry H. N. Lam, P. Qian, Yao Xiao, 2021, Frontiers in Microbiology.

Proteome profiling of evolved methicillin-resistant Staphylococcus aureus strains with distinct daptomycin tolerance and resistance phenotypes

Henry H. N. Lam, P. Qian, Lexin Long, 2022, Frontiers in Microbiology.

Mutation in the Two-Component System Regulator YycH Leads to Daptomycin Tolerance in Methicillin-Resistant Staphylococcus aureus upon Evolution with a Population Bottleneck

Henry H. N. Lam, Long Wu, Jordy Evan Sulaiman, 2022, Microbiology spectrum.

Comparative proteomic investigation of multiple methicillin-resistant Staphylococcus aureus strains generated through adaptive laboratory evolution

Henry H. N. Lam, P. Qian, Long Wu, 2021, iScience.

Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome

Chris Sander, Eric W. Deutsch, Emek Demir, 2016, Cell.

In Vitro Salivary Protein Adsorption Profile on Titanium and Ceramic Surfaces and the Corresponding Putative Immunological Implications

Henry H. N. Lam, W. Leung, M. Burrow, 2020, International journal of molecular sciences.

Quality Control of Danggui Buxue Tang, a Traditional Chinese Medicine Decoction, by 1H-NMR Metabolic Profiling

Henry H. N. Lam, K. Tsim, P. Chan, 2014, Evidence-based complementary and alternative medicine : eCAM.

Metabonomic analysis of water extracts from Chinese and American ginsengs by 1H nuclear magnetic resonance: identification of chemical profile for quality control

Henry H. N. Lam, Karl W K Tsim, P. Chan, 2012, Chinese Medicine.

Graph-based time alignment algorithms for LC-MS datasets with large retention-time drifts

Henry H N Lam, Jijie Wang, Henry H. N. Lam, 2013 .

Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work

Silvio C. E. Tosatto, Andrew R. Jones, Tytus D. Mak, 2023, Journal of proteome research.

Chemical changes of Angelicae Sinensis Radix and Chuanxiong Rhizoma by wine treatment: chemical profiling and marker selection by gas chromatography coupled with triple quadrupole mass spectrometry

Henry H. N. Lam, D. T. Lau, K. Zheng, 2013, Chinese Medicine.

Proteomic Analysis of Nucleus Pulposus Cell-derived Extracellular Matrix Niche and Its Effect on Phenotypic Alteration of Dermal Fibroblasts

Henry H. N. Lam, Xiaofen Liu, B. Chan, 2018, Scientific Reports.

Common Decoy Distributions Simplify False Discovery Rate Estimation in Shotgun Proteomics.

Henry H. N. Lam, Long Wu, D. Madej, 2022, Journal of proteome research.

A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

Eric W. Deutsch, Ruedi Aebersold, Bernd Wollscheid, 2013, Nature.

Building and searching tandem mass (MS/MS) spectral libraries for peptide identification in proteomics.

Ruedi Aebersold, Henry Lam, Henry H. N. Lam, 2011, Methods.

Identifying sources of tick blood meals using unidentified tandem mass spectral libraries

Henry Lam, Wenguang Shao, Henry H. N. Lam, 2013, Nature Communications.

Expanding tandem mass spectral libraries of phosphorylated peptides: advances and applications.

Henry Lam, Henry H. N. Lam, Yingwei Hu, 2013, Journal of proteome research.

PhosphoPep—a database of protein phosphorylation sites in model organisms

Ruedi Aebersold, Ralph Schlapbach, Bernd Bodenmiller, 2008, Nature Biotechnology.

Proteomics Study of DNA-Protein Crosslinks in Methylmethanesulfonate and Fe2+-EDTA-Exposed Human Cells.

Henry H. N. Lam, W. Chan, Yat-Hing Ham, 2020, Chemical research in toxicology.

iProphet: improved validation of peptide identification in shotgun proteomics

Henry H N Lam, Ruedi Aebersold, Alexey I. Nesvizhskii, 2008 .

iProphet: Improved statistical validation of peptide and protein identifications in shotgun proteomics

Henry H N Lam, Luis Mendoza, Ruedi Aebersold, 2011 .

A peptide identification-free, genome sequence-independent shotgun proteomics workflow for strain-level bacterial differentiation

Henry H. N. Lam, M. Zhang, Wenguang Shao, 2015, Scientific Reports.

iProphet: A new tool for combining PeptideProphet results from multiple search engines improves spectrum validation

Henry H N Lam, Ruedi Aebersold, Alexey I. Nesvizhskii, 2008 .

Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics.

Henry H. N. Lam, R. Aebersold, E. Deutsch, 2008, Physiological genomics.

Integrated Omics Reveals the Orchestrating Role of Calycosin in Danggui Buxue Tang, a Herbal Formula Containing Angelicae Sinensis Radix and Astragali Radix, in Inducing Osteoblastic Differentiation and Proliferation

Henry H. N. Lam, K. Tsim, A. X. Yu, 2021, Frontiers in Pharmacology.

Building consensus spectral libraries for peptide identification in proteomics

Ruedi Aebersold, Eric W Deutsch, Stephen E Stein, 2008, Nature Methods.

iPRG-2013: Proteome Informatics Research Group Study: Using RNA-Seq Data to Refine Proteomic Data Analysis

Henry H. N. Lam, E. Deutsch, O. Vitek, 2013 .

Artificial decoy spectral libraries for false discovery rate estimation in spectral library searching in proteomics.

Ruedi Aebersold, Eric W Deutsch, Henry Lam, 2010, Journal of proteome research.

Expanding the Use of Spectral Libraries in Proteomics.

Johannes Griss, Yasset Perez-Riverol, Juan Antonio Vizcaíno, 2018, Journal of proteome research.

Building high-quality assay libraries for targeted analysis of SWATH MS data

Brendan MacLean, Ruedi Aebersold, Dario Amodei, 2015, Nature Protocols.

ClusterSheep: A Graphics Processing Unit-Accelerated Software Tool for Large-Scale Clustering of Tandem Mass Spectra from Shotgun Proteomics.

Henry H. N. Lam, Chak Ming Chan, Long Wu, 2021, Journal of proteome research.

Quantitative Proteomics Reveals UGA-Independent Misincorporation of Selenocysteine throughout the Escherichia coli Proteome.

Henry H. N. Lam, Chunlin Hao, 2020, Journal of proteome research.

Proteomic Investigation of Tolerant Escherichia coli Populations from Cyclic Antibiotic Treatment.

Henry H. N. Lam, Jordy Evan Sulaiman, 2020, Journal of proteome research.

ABRF Proteome Informatics Research Group (iPRG) 2016 Study: Inferring Proteoforms from Bottom-up Proteomics Data.

Samuel H Payne, Yasset Perez-Riverol, Magnus Palmblad, 2018, Journal of biomolecular techniques : JBT.

Proteomics Standards Initiative: Fifteen Years of Progress and Future Work

Martin Eisenacher, Wout Bittremieux, Yasset Perez-Riverol, 2017, Journal of proteome research.

ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of Differentially Abundant Proteins in Label-Free Quantitative LC-MS/MS Experiments.

Brendan MacLean, Magnus Palmblad, Olga Vitek, 2017, Journal of proteome research.

A hybrid retention time alignment algorithm for SWATH‐MS data

Henry Lam, Sabine Amon, Henry H. N. Lam, 2016, Proteomics.

Fritted tip capillary column with negligible dead volume facilitated ultrasensitive and deep proteomics.

Henry H. N. Lam, Weina Gao, Ruijun Tian, 2022, Analytica chimica acta.

Proteomics in antibiotic resistance and tolerance research: Mapping the resistome and the tolerome of bacterial pathogens

Henry H. N. Lam, Jordy Evan Sulaima, 2022, Proteomics.

Novel Daptomycin Tolerance and Resistance Mutations in Methicillin-Resistant Staphylococcus aureus from Adaptive Laboratory Evolution

Henry H. N. Lam, Jordy Evan Sulaiman, 2021, mSphere.

Proteomic Study of the Survival and Resuscitation Mechanisms of Filamentous Persisters in an Evolved Escherichia coli Population from Cyclic Ampicillin Treatment

Henry H. N. Lam, Jordy Evan Sulaiman, 2020, mSystems.

Specific Enrichment and Proteomics Analysis of Escherichia coli Persisters from Rifampin Pretreatment.

Henry H. N. Lam, Jordy Evan Sulaiman, Chunlin Hao, 2018, Journal of proteome research.

Stable Isotope Metabolic Labeling-based Quantitative Phosphoproteomic Analysis of Arabidopsis Mutants Reveals Ethylene-regulated Time-dependent Phosphoproteins and Putative Substrates of Constitutive Triple Response 1 Kinase*

Henry Lam, Yu Xue, Han Cheng, 2013, Molecular & Cellular Proteomics.

MaRiMba: a software application for spectral library-based MRM transition list assembly.

Luis Mendoza, Ruedi Aebersold, Eric W Deutsch, 2009, Journal of proteome research.

Evolution of Bacterial Tolerance Under Antibiotic Treatment and Its Implications on the Development of Resistance

Henry H. N. Lam, Jordy Evan Sulaiman, 2021, Frontiers in Microbiology.

Proteomics and Transcriptomics Uncover Key Processes for Elasnin Tolerance in Methicillin-Resistant Staphylococcus aureus

Henry H. N. Lam, P. Qian, Lexin Long, 2022, mSystems.

Graph-based peak alignment algorithms for multiple liquid chromatography-mass spectrometry datasets

Jijie Wang, Henry Lam, Henry H. N. Lam, 2013, Bioinform..

Combinatory strategy using nanoscale proteomics and machine learning for T cell subtyping in peripheral blood of single multiple myeloma patients.

Henry H. N. Lam, Yangqiu Li, Long Wu, 2021, Analytica chimica acta.

Understanding the improved sensitivity of spectral library searching over sequence database searching in proteomics data analysis

Xin Zhang, Henry Lam, Wenguang Shao, 2011, Proteomics.

iPRG 2011: A Study on the Identification of Electron Transfer Dissociation (ETD) Mass Spectra

Lennart Martens, Henry H N Lam, Nuno Bandeira, 2011 .

Hunting for unexpected post-translational modifications by spectral library searching with tier-wise scoring.

Henry Lam, Chun Wai Manson Ma, Henry H. N. Lam, 2014, Journal of proteome research.

Universal Spectrum Identifier for mass spectra

Wout Bittremieux, Yasset Perez-Riverol, Juan Antonio Vizcaíno, 2020, Nature Methods.

Trans‐Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets

Luis Mendoza, Ruedi Aebersold, Eric W Deutsch, 2010, Proteomics.

Resource Human SRMAtlas : A Resource of Targeted Assays to Quantify the Complete Human Proteome Graphical Abstract Highlights

David D. Shteynberg, Henry H. N. Lam, L. Hood, 2016 .

Tracking the sources of blood meals of parasitic arthropods using shotgun proteomics and unidentified tandem mass spectral libraries

Henry Lam, Wenguang Shao, Henry H. N. Lam, 2014, Nature Protocols.

Elasnin Effectively Eradicates Daptomycin-Resistant Methicillin-Resistant Staphylococcus aureus Biofilms

Henry H. N. Lam, P. Qian, Lexin Long, 2022, Microbiology spectrum.

Using Spectral Libraries for Peptide Identification from Tandem Mass Spectrometry (MS/MS) Data

Ruedi Aebersold, Henry Lam, Henry H. N. Lam, 2010, Current protocols in protein science.

metaSpectraST: an unsupervised and database-independent analysis workflow for metaproteomic MS/MS data using spectrum clustering

Joshua E. Elias, Henry H. N. Lam, Patrick K. H. Lee, 2023, Microbiome.

Modeling Lower-Order Statistics to Enable Decoy-Free FDR Estimation in Proteomics.

Henry H. N. Lam, D. Madej, 2023, Journal of proteome research.

Kan Zhu, Henry Lam, Wenguang Shao, 2013, Proteomics.

Proteomic Analysis of Nucleus Pulposus Cell-derived Extracellular Matrix Niche and Its Effect on Phenotypic Alteration of Dermal Fibroblasts

Henry H. N. Lam, Xiaofen Liu, B. Chan, 2018, Scientific Reports.

Graph-based peak alignment algorithms for multiple liquid chromatography-mass spectrometry datasets

Henry H. N. Lam, Jijie Wang, 2013, Bioinform..

Fast parallel tandem mass spectral library searching using GPU hardware acceleration.

Daniel B. Martin, Henry H. N. Lam, J. Eng, 2011, Journal of proteome research.

Spectral Library Searching for Peptide Identification via Tandem MS

Ruedi Aebersold, Henry Lam, Henry H. N. Lam, 2010, Proteome Bioinformatics.

Absolute quantification of microbial proteomes at different states by directed mass spectrometry

Henry H. N. Lam, R. Aebersold, M. Claassen, 2011, Molecular systems biology.

Spectral Library Searching To Identify Cross-Linked Peptides.

Devin K Schweppe, Juan D Chavez, Jimmy K Eng, 2016, Journal of proteome research.

A ubiquitin and ubiquitin‐like protein spectral library

Tharan Srikumar, Brian Raught, Henry Lam, 2010, Proteomics.

SpectraST: An open-source MS/MS spectra-matching search tool for targeted proteomics

Henry H N Lam, Ruedi Aebersold, Jimmy K. Eng, 2006 .

Fluorescent Imaging and Sorting of High-Lipid-Content Strains of Green Algae by Using an Aggregation-Induced Emission Luminogen.

Henry H. N. Lam, J. Lam, Neng Yan, 2022, ACS nano.