Barry L. Stoddard

发表

Robust computational design, optimization, and structural characterization of retroaldol enzymes

David Baker, Barry L. Stoddard, Eric A. Althoff, 2011 .

Author response: Precise assembly of complex beta sheet topologies from de novo designed building blocks

John F. Hunt, David Baker, Barry L. Stoddard, 2015 .

Corrigendum: Biocontainment of genetically modified organisms by synthetic protein design

Ryo Takeuchi, George M. Church, Barry L. Stoddard, 2015, Nature.

Faculty Opinions recommendation of Direct observation of base-pair stepping by RNA polymerase.

Barry L. Stoddard, 2005 .

Faculty Opinions recommendation of Computational design of a single amino acid sequence that can switch between two distinct protein folds.

Barry L. Stoddard, 2006 .

Computationally Designed Ammelide Deaminase

David Baker, Barry L. Stoddard, Jill M. Bolduc, 2009 .

Computational design of ligand-binding proteins with high affinity and selectivity

David Baker, Barry L. Stoddard, Sagar D. Khare, 2013, Nature.

Biocontainment of genetically modified organisms by synthetic protein design

Ryo Takeuchi, George M. Church, Barry L. Stoddard, 2015, Nature.

Rational design of alpha-helical tandem repeat proteins with closed architectures

David Baker, Barry L. Stoddard, Fabio Parmeggiani, 2015, Nature.

Natural and engineered nicking endonucleases—from cleavage mechanism to engineering of strand-specificity

Barry L. Stoddard, Siu-Hong Chan, Shuang-yong Xu, 2010, Nucleic Acids Res..

LAHEDES: the LAGLIDADG homing endonuclease database and engineering server

Barry L. Stoddard, Gregory K. Taylor, Abigail R. Lambert, 2012, Nucleic Acids Res..

De novo design of a fluorescence-activating β-barrel

William Sheffler, Binchen Mao, Barry L. Stoddard, 2018, Nature.

Control of repeat protein curvature by computational protein design

David Baker, Barry L. Stoddard, Keunwan Park, 2014, Nature Structural &Molecular Biology.

Engineering domain fusion chimeras from I-OnuI family LAGLIDADG homing endonucleases

David Baker, Patrick Danaher, Barry L. Stoddard, 2012, Nucleic acids research.

megaTALs: a rare-cleaving nuclease architecture for therapeutic genome engineering

David Baker, Jay Shendure, Barry L. Stoddard, 2013, Nucleic acids research.

Mir for the crystallographers' money

Barry L. Stoddard, Roland K. Strong, Gregory K. Farber, 1992, Nature.

The homing endonuclease I-CreI uses three metals, one of which is shared between the two active sites

Barry L. Stoddard, Raymond J. Monnat, B. Stoddard, 2001, Nature Structural Biology.

Increased Diels-Alderase Activity through Foldit Player Guided Backbone Remodeling

David Baker, Zoran Popovic, Jacob B. Bale, 2012, Nature Biotechnology.

Generation of a nicking enzyme that stimulates site-specific gene conversion from the I-AniI LAGLIDADG homing endonuclease

Ryo Takeuchi, Barry L. Stoddard, Raymond J. Monnat, 2009, Proceedings of the National Academy of Sciences.

Sampling and energy evaluation challenges in ligand binding protein design

David Baker, Barry L. Stoddard, Hahnbeom Park, 2017, Protein science : a publication of the Protein Society.

Generation of single-chain LAGLIDADG homing endonucleases from native homodimeric precursor proteins

Barry L. Stoddard, Umut Y. Ulge, Raymond J. Monnat, 2009, Nucleic acids research.

DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI

Barry L. Stoddard, Raymond J. Monnat, Melissa S. Jurica, 1998, Nature.

A Computationally Designed Inhibitor of an Epstein-Barr Viral Bcl-2 Protein Induces Apoptosis in Infected Cells

David Baker, Barry L. Stoddard, Bruno E. Correia, 2014, Cell.

Computational Design of Ligand Binding Proteins

Barry L. Stoddard, B. Stoddard, 2016, Methods in Molecular Biology.

High-resolution profiling of homing endonuclease binding and catalytic specificity using yeast surface display

Barry L. Stoddard, Lindsey Doyle, Christopher G. Hubert, 2009, Nucleic acids research.

Breaking up is hard to do

Shmuel Pietrokovski, Barry L. Stoddard, B. Stoddard, 1998, Nature Structural Biology.

Computational design of an unnatural amino acid dependent metalloprotein with atomic level accuracy.

Liang Tong, Vikram Khipple Mulligan, Barry L. Stoddard, 2013, Journal of the American Chemical Society.

Functional metagenomics-guided discovery of potent Cas9 inhibitors in the human microbiome

Barry L. Stoddard, B. Stoddard, Kevin J. Forsberg, 2019, bioRxiv.

Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs

David Baker, Barry L. Stoddard, Justin Ashworth, 2010, Nucleic acids research.

Homing endonuclease I-CreI derivatives with novel DNA target specificities

Barry L. Stoddard, B. Stoddard, L. Seligman, 2006, Nucleic acids research.

The 2.1-A resolution structure of iron superoxide dismutase from Pseudomonas ovalis.

Barry L. Stoddard, Dagmar Ringe, Gregory A. Petsko, 1990, Biochemistry.