Philip R. Gafken

发表

Mass Spectrometry Data Collection in Parallel at Multiple Core Facilities Operating TripleTOF 5600 and Orbitrap Elite/Velos Pro/Q Exactive Mass Spectrometers.

Bruce A. Stanley, Derrick J. Swinton, Anthony T. Yeung, 2013 .

ARTEMIS: A Novel Mass-Spec Platform for HLA-Restricted Self and Disease-Associated Peptide Discovery

Roland K. Strong, Mi-Youn Brusniak, Philip R. Gafken, 2021, Frontiers in Immunology.

Dot1p Modulates Silencing in Yeast by Methylation of the Nucleosome Core

Philip R. Gafken, Fred van Leeuwen, D. Gottschling, 2002, Cell.

Myc-dependent Mitochondrial Generation of Acetyl-CoA Contributes to Fatty Acid Biosynthesis and Histone Acetylation during Cell Cycle Entry*

Fionnuala Morrish, Philip R. Gafken, J. Kelleher, 2010, The Journal of Biological Chemistry.

Cyclic Rhamnosylated Elongation Factor P Establishes Antibiotic Resistance in Pseudomonas aeruginosa

Julian P. Whitelegge, Kym F. Faull, Sarah B Erickson, 2015, mBio.

Kinetic Analysis of BCL11B Multisite Phosphorylation–Dephosphorylation and Coupled Sumoylation in Primary Thymocytes by Multiple Reaction Monitoring Mass Spectroscopy

Philip R. Gafken, T. Filtz, W. Vogel, 2014, Journal of proteome research.

Biomarker Panel for Chronic Graft-Versus-Host Disease.

Philip R. Gafken, Y. Ogata, B. Storer, 2016, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

Proteomics-driven Antigen Discovery for Development of Vaccines Against Gonorrhea*

Philip R. Gafken, K. Holmes, M. Unemo, 2016, Molecular & Cellular Proteomics.

Quantitative Proteomic Analysis of the Cell Envelopes and Native Membrane Vesicles Derived from Gram‐Negative Bacteria

Philip R. Gafken, P. Gafken, R. Zielke, 2014, Current protocols in microbiology.

Quantitative Proteomics of the Neisseria Gonorrhoeae Cell Envelope and Membrane Vesicles for the Discovery of Potential Therapeutic Targets*

Philip R. Gafken, P. Gafken, R. Zielke, 2014, Molecular & Cellular Proteomics.

Multiplex targeted proteomic assay for biomarker detection in plasma: a pancreatic cancer biomarker case study.

David R Goodlett, John Rush, Philip R Gafken, 2012, Journal of proteome research.

A biomarker panel for risk of early respiratory failure following hematopoietic cell transplantation

Philip R. Gafken, C. Bollard, S. Farag, 2022, Blood advances.

Mass spectrometric quantification of acetylation at specific lysines within the amino-terminal tail of histone H4.

Philip R Gafken, Philip R. Gafken, D. Gottschling, 2003, Analytical biochemistry.

Phosphorylation at S365 is a gatekeeper event that changes the structure of Cx43 and prevents down-regulation by PKC

Philip R. Gafken, P. Gafken, P. Lampe, 2007, The Journal of cell biology.

A targeted proteomics–based pipeline for verification of biomarkers in plasma

Pei Wang, Jacob Kennedy, Jeffrey R. Whiteaker, 2011, Nature Biotechnology.

The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools.

Ruedi Aebersold, Jimmy K Eng, Parag Mallick, 2008, Journal of proteome research.

Heritable chromatin structure: Mapping “memory” in histones H3 and H4

Philip R. Gafken, M. Parthun, D. Gottschling, 2002, Proceedings of the National Academy of Sciences of the United States of America.

DGCR8 Mediates Repair of UV-Induced DNA Damage Independently of RNA Processing.

Philip R. Gafken, B. Clurman, K. Sugasawa, 2017, Cell reports.

Ubiquitin–Proteasome-Mediated Synaptic Reorganization: A Novel Mechanism Underlying Rapid Ischemic Tolerance

Philip R. Gafken, R. Simon, D. Henshall, 2008, The Journal of Neuroscience.

13C- and 15N-Labeling Strategies Combined with Mass Spectrometry Comprehensively Quantify Phospholipid Dynamics in C. elegans

Blair C. R. Dancy, Philip R. Gafken, P. Gafken, 2015, PloS one.

Identification of long-lived proteins retained in cells undergoing repeated asymmetric divisions

Philip R. Gafken, D. Gottschling, P. Gafken, 2014, Proceedings of the National Academy of Sciences.

Proteomic analysis of native metabotropic glutamate receptor 5 protein complexes reveals novel molecular constituents

Philip R. Gafken, A. Norbeck, M. Minami, 2004, Journal of neurochemistry.

A Highly Versatile Expression System for the Production of Multiply Phosphorylated Proteins.

Philip R Gafken, Philip R. Gafken, Ryan A Mehl, 2019, ACS chemical biology.

NFX1-123 and Poly(A) Binding Proteins Synergistically Augment Activation of Telomerase in Human Papillomavirus Type 16 E6-Expressing Cells

Philip R. Gafken, D. Galloway, L. Gewin, 2007, Journal of Virology.

Dynamic changes in histone acetylation regulate origins of DNA replication

Philip R. Gafken, T. Tsukiyama, P. Gafken, 2010, Nature Structural &Molecular Biology.

Myc influences global chromatin structure

Philip R. Gafken, R. Eisenman, S. McMahon, 2006, The EMBO journal.

Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments.

Adam Rauch, Jeffrey Whiteaker, Heidi Zhang, 2006, Journal of proteome research.

Immunodepletion plasma proteomics by tripleTOF 5600 and Orbitrap elite/LTQ-Orbitrap Velos/Q exactive mass spectrometers.

Kelly A. Jones, Hon-chiu E Leung, Bhavinkumar B. Patel, 2013, Journal of proteome research.

Translation Control of Swarming Proficiency in Bacillus subtilis by 5-Amino-pentanolylated Elongation Factor P*

Sarah B Erickson, Philip R. Gafken, M. Ibba, 2016, The Journal of Biological Chemistry.

State-dependent protein-protein interactions mediating 4-1BB CAR Signaling

Philip R. Gafken, ChenWei Lin, Josh Gustafson, 2022, bioRxiv.

Identification of a Novel Bcl-2-interacting Mediator of Cell Death (Bim) E3 Ligase, Tripartite Motif-containing Protein 2 (TRIM2), and Its Role in Rapid Ischemic Tolerance-induced Neuroprotection*

Philip R. Gafken, R. Simon, D. Henshall, 2011, The Journal of Biological Chemistry.

Evaluation of matrix‐assisted laser desorption/ionization‐time of flight mass spectrometry proteomic profiling: identification of alpha 2‐HS glycoprotein B‐chain as a biomarker of diet

Philip R. Gafken, P. Gafken, J. Lampe, 2005, Proteomics.

Ubiquitination-Linked Phosphorylation of the FANCI S/TQ Cluster Contributes to Activation of the Fanconi Anemia I/D2 Complex.

Philip R. Gafken, T. Taniguchi, P. Gafken, 2017, Cell reports.

Histone H3.3 is enriched in covalent modifications associated with active chromatin.

Philip R. Gafken, S. Henikoff, P. Gafken, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Lentivirus-mediated Gene Transfer in Hematopoietic Stem Cells Is Impaired in SHIV-infected, ART-treated Nonhuman Primates.

Philip R. Gafken, Hannah W. Miller, Shiu-Lok Hu, 2015, Molecular therapy : the journal of the American Society of Gene Therapy.

Phosphorylation-Dependent Regulation of Cyclin D1 and Cyclin A Gene Transcription by TFIID Subunits TAF1 and TAF7

Philip R. Gafken, J. Ranish, E. Wang, 2012, Molecular and Cellular Biology.

Discovery and Validation of a Compound to Target Ewing’s Sarcoma

Philip R. Gafken, W. Vogel, M. Leid, 2021, Pharmaceutics.

A Chicken Ovalbumin Upstream Promoter Transcription Factor I (COUP-TFI) Complex Represses Expression of the Gene Encoding Tumor Necrosis Factor α-induced Protein 8 (TNFAIP8)*♦

Philip R. Gafken, M. Leid, P. Gafken, 2009, Journal of Biological Chemistry.

Modifications of IL-6 by Hypochlorous Acids: Effects on Receptor Binding

Philip R. Gafken, P. Gafken, J. Edgar, 2021, ACS omega.

Collision energy optimization of b- and y-ions for multiple reaction monitoring mass spectrometry.

Daniel B. Martin, Philip R. Gafken, P. Gafken, 2011, Journal of proteome research.

Aberrant Glycosylation of Plasma Proteins in Severe Preeclampsia Promotes Monocyte Adhesion

Jonathan D. Stallings, Philip R. Gafken, Y. Ogata, 2014, Reproductive Sciences.

Mass spectrometry of UV-cross-linked protein-nucleic acid complexes: identification of amino acid residues in the single-stranded DNA-binding domain of human replication protein A.

Philip R. Gafken, P. Gafken, D. Barofsky, 2004, Analytical chemistry.

The Helicobacter pylori cell shape promoting protein Csd5 interacts with the cell wall, MurF, and the bacterial cytoskeleton

Philip R. Gafken, Lisa A. Jones, Jennifer A. Taylor, 2018, Molecular microbiology.

Methodologies for Characterizing Phosphoproteins by Mass Spectrometry

Philip R Gafken, Philip R. Gafken, P. Gafken, 2006, Cell communication & adhesion.

Validated graft-specific biomarkers identify patients at risk for chronic graft-versus-host disease and death

Philip R. Gafken, S. Paczesny, B. Blazar, 2023, The Journal of clinical investigation.

Quantitative proteomics reveals key roles for post-transcriptional gene regulation in the molecular pathology of facioscapulohumeral muscular dystrophy

Philip R. Gafken, S. Tapscott, Y. Ogata, 2019, eLife.

Quantitative proteomics reveals key roles for post-transcriptional gene regulation in the molecular pathology of FSHD

Philip R. Gafken, S. Tapscott, Y. Ogata, 2018, bioRxiv.

Identification of an Atypical Calcium-dependent Calmodulin Binding Site on the C-terminal Domain of Glun2a Elsevier Editorial System(tm) for Biochemical and Biophysical Research Communications Manuscript Draft Title: Identification of an Atypical Calcium-dependent Calmodulin Binding Site on the C-te

Philip R. Gafken, P. Gafken, A. Hau, 2022 .

Murine chronic graft-versus-host disease proteome profiling discovers CCL15 as a novel biomarker in patients.

Nathan H. Roy, Philip R. Gafken, Y. Ogata, 2018, Blood.

Modification of IL-6 by hypochlorous acid: effects on receptor binding and possible role in treatment of COVID-19

Philip R. Gafken, P. Gafken, J. Meschke, 2021 .

Lentivirus-mediated Gene Transfer in Hematopoietic Stem Cells Is Impaired in SHIV-infected, ART-treated Nonhuman Primates.

Philip R. Gafken, Hannah W. Miller, Shiu-Lok Hu, 2015, Molecular therapy : the journal of the American Society of Gene Therapy.

Immunodepletion plasma proteomics by tripleTOF 5600 and Orbitrap elite/LTQ-Orbitrap Velos/Q exactive mass spectrometers.

Kelly A. Jones, Hon-chiu E Leung, Bhavinkumar B. Patel, 2013, Journal of proteome research.

Identification of an atypical calcium-dependent calmodulin binding site on the C-terminal domain of GluN2A.

Philip R. Gafken, A. Hau, M. Schimerlik, 2014, Biochemical and biophysical research communications.

Hypochlorous acid as a disinfectant for high‐risk HPV: Insight into the mechanism of action

Philip R. Gafken, P. Gafken, S. Alam, 2022, Journal of medical virology.