Wolfram Weckwerth

发表

Stefan Kempa, Dirk Walther, Oliver Ebenhoeh, 2009 .

Unpredictability of metabolism—the key role of metabolomics science in combination with next-generation genome sequencing

Wolfram Weckwerth, W. Weckwerth, 2011, Analytical and bioanalytical chemistry.

INPPO Actions and Recognition as a Driving Force for Progress in Plant Proteomics: Change of Guard, INPPO Update, and Upcoming Activities

Wolfram Weckwerth, Ganesh Kumar Agrawal, Rainer Cramer, 2013 .

PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor

Joachim Selbig, Dirk Walther, Wolfram Weckwerth, 2007, Nucleic Acids Res..

Integration of proteomic and metabolomic profiling as well as metabolic modeling for the functional analysis of metabolic networks.

Dirk Walther, Oliver Ebenhöh, Wolfram Weckwerth, 2011, Methods in molecular biology.

Mathematical Modeling of Plant Metabolism―From Reconstruction to Prediction

Wolfram Weckwerth, Thomas Nägele, T. Nägele, 2012, Metabolites.

Mathematical Modeling Approaches in Plant Metabolomics.

Wolfram Weckwerth, Lisa Fürtauer, Thomas Nägele, 2018, Methods in molecular biology.

Consistency analysis of metabolic correlation networks

Marc-Thorsten Hütt, Mark Müller-Linow, Wolfram Weckwerth, 2007, BMC Systems Biology.

Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins

Joachim Selbig, Dirk Walther, Wolfram Weckwerth, 2009, BMC Bioinformatics.

Metabolic Networks from a Systems Perspective: From Experiment to Biological Interpretation

Wolfram Weckwerth, Ralph E. Steuer, 2004 .

ProMEX – a mass spectral reference database for plant proteomics

Wolfram Weckwerth, Stefanie Wienkoop, Christiana Staudinger, 2012, Front. Plant Sci..

Challenges of Inversely Estimating Jacobian from Metabolomics Data

Wolfram Weckwerth, Xiaoliang Sun, Bettina Länger, 2015, Front. Bioeng. Biotechnol..

Observing and Interpreting Correlations in Metabolic Networks

Jürgen Kurths, Ralph E. Steuer, Oliver Fiehn, 2003, Bioinform..

mzGroupAnalyzer-Predicting Pathways and Novel Chemical Structures from Untargeted High-Throughput Metabolomics Data

Lei Wang, Wolfram Weckwerth, David Lyon, 2014, PloS one.

COVAIN: a toolbox for uni- and multivariate statistics, time-series and correlation network analysis and inverse estimation of the differential Jacobian from metabolomics covariance data

Wolfram Weckwerth, Xiaoliang Sun, W. Weckwerth, 2012, Metabolomics.

Species-specific analysis of protein sequence motifs using mutual information

Joachim Selbig, Wolfram Weckwerth, Jan Hummel, 2005, BMC Bioinformatics.

GMD@CSB.DB: the Golm Metabolome Database

Yves Gibon, Mark Stitt, Lothar Willmitzer, 2005, Bioinform..

ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites

Joachim Selbig, Dirk Walther, Wolfram Weckwerth, 2007, BMC Bioinformatics.

A Cloud Framework for High Throughput Biological Data Processing

Siegfried Benkner, Yuriy Kaniovskyi, Wolfram Weckwerth, 2011 .

A Strategy for Functional Interpretation of Metabolomic Time Series Data in Context of Metabolic Network Information

Wolfram Weckwerth, Lisa Fürtauer, Thomas Nägele, 2016, Front. Mol. Biosci..

Visualizing plant metabolomic correlation networks using clique-metabolite matrices

Thomas Linke, Oliver Fiehn, Wolfram Weckwerth, 2001, Bioinform..

Integration of metabolomics and proteomics in molecular plant physiology--coping with the complexity by data-dimensionality reduction.

Wolfram Weckwerth, W. Weckwerth, 2008, Physiologia plantarum.

An International Bioinformatics Infrastructure to Underpin the Arabidopsis Community

Christopher J. Rawlings, Paul N. Schofield, Andrew J. Millar, 2010, Plant Cell.

Deciphering metabolic networks.

Oliver Fiehn, Wolfram Weckwerth, O. Fiehn, 2003, European journal of biochemistry.

An integrated strategy for identification and relative quantification of site-specific protein phosphorylation using liquid chromatography coupled to MS2/MS3.

Wolfram Weckwerth, W. Weckwerth, U. Lehmann, 2005, Rapid communications in mass spectrometry : RCM.

The role of mass spectrometry in plant systems biology.

Wolfram Weckwerth, W. Weckwerth, M. Glinski, 2006, Mass spectrometry reviews.

Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins.

Oliver Fiehn, Wolfram Weckwerth, Nobuo Tanaka, 2004, Rapid communications in mass spectrometry : RCM.

Subcellular reprogramming of metabolism during cold acclimation in Arabidopsis thaliana.

Wolfram Weckwerth, W. Weckwerth, A. Heyer, 2017, Plant, cell & environment.

Correlative GC-TOF-MS-based metabolite profiling and LC-MS-based protein profiling reveal time-related systemic regulation of metabolite–protein networks and improve pattern recognition for multiple biomarker selection

Joachim Selbig, Matthias Scholz, Wolfram Weckwerth, 2005, Metabolomics.

Proteomics and Metabolomics: Two Emerging Areas for Legume Improvement

Rajeev K. Varshney, Wolfram Weckwerth, W. Weckwerth, 2015, Front. Plant Sci..

Metabolomics : methods and protocols

Wolfram Weckwerth, W. Weckwerth, 2007 .

A gentle guide to the analysis of metabolomic data.

Joachim Selbig, Wolfram Weckwerth, Ralf Steuer, 2007, Methods in molecular biology.

Combination of Hypoglycemia and Metformin Impairs Tumor Metabolic Plasticity and Growth by Modulating the PP2A-GSK3β-MCL-1 Axis.

Luca Mazzarella, Wolfram Weckwerth, Giuseppe Curigliano, 2019, Cancer cell.

Differential Multisite Phosphorylation of the Trehalose-6-phosphate Synthase Gene Family in Arabidopsis thaliana

Wolfram Weckwerth, W. Weckwerth, M. Glinski, 2005, Molecular & Cellular Proteomics.

Scoring and identifying organism-specific functional patterns and putative phosphorylation sites in protein sequences using mutual information.

Joachim Selbig, Wolfram Weckwerth, J. Selbig, 2003, Biochemical and biophysical research communications.

Stable isotope-free quantitative shotgun proteomics combined with sample pattern recognition for rapid diagnostics.

Wolfram Weckwerth, Stefanie Wienkoop, Michaela Niemann, 2006, Journal of separation science.

Combined Metabolomic Analysis of Plasma and Urine Reveals AHBA, Tryptophan and Serotonin Metabolism as Potential Risk Factors in Gestational Diabetes Mellitus (GDM)

Wolfram Weckwerth, Alexandra Kautzky-Willer, Walter Jaeger, 2017, Front. Mol. Biosci..

Cell-specific protein profiling in Arabidopsis thaliana trichomes: identification of trichome-located proteins involved in sulfur metabolism and detoxification.

Wolfram Weckwerth, Joachim Fisahn, Stefanie Wienkoop, 2004, Phytochemistry.

Stable isotope labeling of phosphopeptides for multiparallel kinase target analysis and identification of phosphorylation sites.

Wolfram Weckwerth, Stefanie Wienkoop, W. Weckwerth, 2003, Rapid communications in mass spectrometry : RCM.

Chronic signaling via the metabolic checkpoint kinase mTORC1 induces macrophage granuloma formation and marks sarcoidosis progression

Wolfram Weckwerth, Boris Kovacic, Peter Kuess, 2016, Nature Immunology.

A survey of the Arabidopsis thaliana mitochondrial phosphoproteome

Wolfram Weckwerth, Nicolas L Taylor, W. Weckwerth, 2009, Proteomics.

Integrative profiling of metabolites and proteins: improving pattern recognition and biomarker selection for systems level approaches.

Wolfram Weckwerth, Stefanie Wienkoop, W. Weckwerth, 2007, Methods in molecular biology.

Identification of Novel in vivo MAP Kinase Substrates in Arabidopsis thaliana Through Use of Tandem Metal Oxide Affinity Chromatography*

Wolfram Weckwerth, Wolfgang Hoehenwarter, Volker Egelhofer, 2012, Molecular & Cellular Proteomics.

An automated GCxGC‐TOF‐MS protocol for batch‐wise extraction and alignment of mass isotopomer matrixes from differential 13C‐labelling experiments: a case study for photoautotrophic‐mixotrophic grown Chlamydomonas reinhardtii cells

Wolfram Weckwerth, Jan Hummel, Stefanie Wienkoop, 2009, Journal of basic microbiology.

System-Level and Granger Network Analysis of Integrated Proteomic and Metabolomic Dynamics Identifies Key Points of Grape Berry Development at the Interface of Primary and Secondary Metabolism

Lei Wang, Wolfram Weckwerth, Jakob Weiszmann, 2017, Front. Plant Sci..

Metabolomics and metabolite profiling

Rudolf Krska, Rainer Schuhmacher, Wolfram Weckwerth, 2013, Analytical and Bioanalytical Chemistry.

Phytochemical composition of Potentilla anserina L. analyzed by an integrative GC-MS and LC-MS metabolomics platform

Wolfram Weckwerth, Stefanie Wienkoop, David Lyon, 2012, Metabolomics.

Time to articulate a vision for the future of plant proteomics – A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO)

Shoshi Kikuchi, Paul A Haynes, Wolfram Weckwerth, 2011, Proteomics.

Exploring natural variation of Pinus pinaster Aiton using metabolomics: Is it possible to identify the region of origin of a pine from its metabolites?

Wolfram Weckwerth, Juan Majada, Mónica Meijón, 2016, Molecular ecology.

Proteome Analysis of Arabidopsis Leaf Peroxisomes Reveals Novel Targeting Peptides, Metabolic Pathways, and Defense Mechanisms[W]

Wolfram Weckwerth, Olaf Jahn, W. Weckwerth, 2007, The Plant Cell Online.

Boosting the Globalization of Plant Proteomics through INPPO: Current Developments and Future Prospects

Wolfram Weckwerth, Ganesh Kumar Agrawal, Rainer Cramer, 2012, Proteomics.

Granger causality in integrated GC–MS and LC–MS metabolomics data reveals the interface of primary and secondary metabolism

Wolfram Weckwerth, Franz Hadacek, David Lyon, 2012, Metabolomics.

A workflow for mathematical modeling of subcellular metabolic pathways in leaf metabolism of Arabidopsis thaliana

Wolfram Weckwerth, Thomas Nägele, T. Nägele, 2013, Front. Plant Sci..

System level analysis of cacao seed ripening reveals a sequential interplay of primary and secondary metabolism leading to polyphenol accumulation and preparation of stress resistance.

Wolfram Weckwerth, Kristina Gruden, Lei Wang, 2016, The Plant journal : for cell and molecular biology.

Metabolomics: an integral technique in systems biology.

Wolfram Weckwerth, W. Weckwerth, 2010, Bioanalysis.

Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites

Wolfram Weckwerth, W. Weckwerth, F. Wolschin, 2005, Plant Methods.

The handbook of plant metabolomics

Wolfram Weckwerth, Günter Kahl, W. Weckwerth, 2013 .

Integration of Metabolomic and Proteomic Phenotypes

Joachim Selbig, Matthias Scholz, Wolfram Weckwerth, 2008, Molecular & Cellular Proteomics.

Facing challenges in Proteomics today and in the coming decade: Report of Roundtable Discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010.

Fredrik Levander, Jürgen Cox, Eugene Kolker, 2011, Journal of proteomics.

Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment.

Wolfram Weckwerth, Wolfgang Hoehenwarter, W. Weckwerth, 2010, The Plant journal : for cell and molecular biology.

Methionine oxidation in peptides--a source for false positive phosphopeptide identification in neutral loss driven MS3.

Wolfram Weckwerth, Florian Wolschin, 2006, Rapid communications in mass spectrometry : RCM.