Yuji Nagata

发表

Report on NAB SHOW 2015

Akinori Masuoka, Tsuyoshi Sakiyama, Yuji Nagata, 2015 .

IBC 2014 Report

Yuji Nagata, Yuji Miyasaka, Makoto Urakawa, 2015 .

Molecular Bases of Enantioselectivity of Haloalkane Dehalogenase DbjA

Yuji Nagata, Jiří Damborský, Yukari Sato, 2011 .

Effect of water electrolysis temperature of hydrogen production system using direct coupling photovoltaic and water electrolyzer

Yuji Nagata, Tetsuhiko Maeda, Masayoshi Ishida, 2016 .

GenomeMatcher: Tool box for efficient genomic analysis.

Yuji Nagata, Masataka Tsuda, Yoshiyuki Ohtsubo, 2010 .

Commercialization Progress and Future Vision of Residential Fuel Cell "Ene-FARM" in Toshiba

Yuji Nagata, 2013 .

Natural and Engineered Enantioselective HaloalkaneDehalogenases

Yuji Nagata, Jiří Damborský, Yukari Sato, 2006 .

GenomeMatcher: A graphical user interface for DNA sequence comparison

Yuji Nagata, Masataka Tsuda, Yoshiyuki Ohtsubo, 2008, BMC Bioinformatics.

Catalytic Mechanism of the Haloalkane Dehalogenase LinB from Sphingomonas paucimobilis UT26*

Yuji Nagata, Dick B. Janssen, J. Damborský, 2003, Journal of Biological Chemistry.

Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 A resolution: dynamics of catalytic residues.

Yuji Nagata, Michal Otyepka, Jirí Damborský, 2004, Biochemistry.

Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates.

Yuji Nagata, Jirí Damborský, Zbynek Prokop, 2003, Biochemistry.

Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product- and water-mediated inhibition.

Yuji Nagata, Jirí Damborský, Zbynek Prokop, 2002, Biochemistry.

Halide-stabilizing residues of haloalkane dehalogenases studied by quantum mechanic calculations and site-directed mutagenesis.

Yuji Nagata, Jaroslav Koca, Jirí Damborský, 2002, Biochemistry.

Reconstruction of Mycobacterial Dehalogenase Rv2579 by Cumulative Mutagenesis of Haloalkane Dehalogenase LinB

Yuji Nagata, Masataka Tsuda, J. Damborský, 2003, Applied and Environmental Microbiology.

Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance

Hiroshi Mori, Yuji Nagata, Masahira Hattori, 2015, DNA research : an international journal for rapid publication of reports on genes and genomes.

Modification of Activity and Specificity of Haloalkane Dehalogenase from Sphingomonas paucimobilis UT26 by Engineering of Its Entrance Tunnel*

Yuji Nagata, Masataka Tsuda, J. Damborský, 2003, Journal of Biological Chemistry.

Design and Experimental Application of a Novel Non-Degenerate Universal Primer Set that Amplifies Prokaryotic 16S rRNA Genes with a Low Possibility to Amplify Eukaryotic rRNA Genes

Hiroshi Mori, Yuji Nagata, Atsushi Toyoda, 2013, DNA research : an international journal for rapid publication of reports on genes and genomes.

Aerobic degradation of lindane (γ-hexachlorocyclohexane) in bacteria and its biochemical and molecular basis

Yuji Nagata, Masataka Tsuda, Yoshiyuki Ohtsubo, 2007, Applied Microbiology and Biotechnology.

Mechanism‐based Quantitative Structure–Biodegradability Relationships for Hydrolytic Dehalogenation of Chloro‐ and Bromo‐Alkenes

Yuji Nagata, Jiří Damborský, Michal Kutý, 1998 .

Degradation of β-Hexachlorocyclohexane by Haloalkane Dehalogenase LinB from Sphingomonas paucimobilis UT26

Yuji Nagata, Yukari Sato, Masataka Tsuda, 2005, Applied and Environmental Microbiology.

Identification of the catalytic triad in the haloalkane dehalogenase from Sphingomonas paucimobilis UT26

Yuji Nagata, J. Damborský, Y. Nagata, 1999, FEBS letters.

Construction of Signature-tagged Mutant Library in Mesorhizobium loti as a Powerful Tool for Functional Genomics

Yuji Nagata, Yasukazu Nakamura, Akiko Watanabe, 2008, DNA research : an international journal for rapid publication of reports on genes and genomes.

Quantitative analysis of substrate specificity of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26.

Yuji Nagata, Jirí Damborský, Federico Gago, 2005, Biochemistry.

Cloning, Biochemical Properties, and Distribution of Mycobacterial Haloalkane Dehalogenases

Yuji Nagata, Michal Strouhal, J. Damborský, 2005, Applied and Environmental Microbiology.

Crystallization and preliminary X-ray analysis of gamma-hexachlorocyclohexane dehydrochlorinase LinA from Sphingobium japonicum UT26.

Yuji Nagata, Masahiko Okai, Koji Nagata, 2009, Acta crystallographica. Section F, Structural biology and crystallization communications.

Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineering.

Yuji Nagata, Jan Brezovsky, Zbynek Prokop, 2010, Angewandte Chemie.

Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate.

Yuji Nagata, Michal Otyepka, Zbynek Prokop, 2009, Nature chemical biology.