Dirk Labudde

发表

Application of an interpretable classification model on Early Folding Residues during protein folding

Thomas Villmann, Sebastian Bittrich, Marika Kaden, 2018, bioRxiv.

Unsupervised Discovery of Geometrically Common Structural Motifs and Long-Range Contacts in Protein 3D Structures

Florian Kaiser, Dirk Labudde, D. Labudde, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

eProS - A Bioinformatics Knowledgebase, Toolbox and Database for Characterizing Protein Function

Dirk Labudde, Florian Heinke, Daniel Stockmann, 2015, BDAS.

A Novel Approach for Fast Protein Structure Comparison and Heuristic Structure Database Searching Based on Residue EigenRank Scores

Dirk Labudde, Florian Heinke, Lars Hempel, 2019, BDAS.

Pattern Recognition of Single-Molecule Force Spectroscopy Data

Michael Schroeder, Annalisa Marsico, Dirk Labudde, 2007, ER Workshops.

Semantic Tools for Forensics: Approaches in Forensic Text Analysis

Dirk Labudde, Michael Spranger, 2013 .

Application of an interpretable classification model on Early Folding Residues during protein folding

Thomas Villmann, Sebastian Bittrich, Marika Kaden, 2018, BioData Mining.

SoNA: A Knowledge-based Social Network Analysis Framework for Predictive Policing

Dirk Labudde, Michael Spranger, Florian Heinke, 2017 .

Establishing a Question Answering System for Forensic Texts

Dirk Labudde, Michael Spranger, D. Labudde, 2014 .

Evolutionary Influenced Interaction Pattern as Indicator for the Investigation of Natural Variants Causing Nephrogenic Diabetes Insipidus

Dirk Labudde, Steffen Grunert, D. Labudde, 2015, Comput. Math. Methods Medicine.

Numeric promoter description - A comparative view on concepts and general application.

Dirk Labudde, Rico Beier, D. Labudde, 2016, Journal of molecular graphics & modelling.

A Novel Algorithm for Enhanced Structural Motif Matching in Proteins

Dirk Labudde, Florian Kaiser, Alexander Eisold, 2015, J. Comput. Biol..

Backbone Brackets and Arginine Tweezers delineate Class I and Class II aminoacyl tRNA synthetases

Michael Schroeder, V. Joachim Haupt, Sebastian Bittrich, 2018, bioRxiv.

Efficient layered density-based clustering of categorical data

Xiaogang Wang, Aijun An, Dirk Labudde, 2009, J. Biomed. Informatics.

Promoting Diversity in Top Hits for Biomedical Passage Retrieval

Qinmin Hu, Xiangji Huang, Aijun An, 2009 .

Graph representation of high-dimensional alpha-helical membrane protein data

Dirk Labudde, Steffen Grunert, 2013, BioData Mining.

Functional and Early Folding Residues are separated in proteins to increase evolvability and robustness

Michael Schroeder, Sebastian Bittrich, Dirk Labudde, 2018, bioRxiv.

Understanding of SMFS Barriers by Means of Energy Profiles

Michael Schroeder, Annalisa Marsico, Dirk Labudde, 2007, German Conference on Bioinformatics.

A Structure-Based Analysis of Single Molecule Force Spectroscopy (SMFS) Data for Bacteriorhodopsin and Four Mutants

Michael Schroeder, Annalisa Marsico, Dirk Labudde, 2006, CompLife.

Analysis of X-Ray Images of Femora for Age at Death Estimation of Skeletal Individuals

Dirk Labudde, Stefan Schildbach, Sven Becker, 2016, 2016 International Conference of the Biometrics Special Interest Group (BIOSIG).

eQuant - A Server for Fast Protein Model Quality Assessment by Integrating High-Dimensional Data and Machine Learning

Sebastian Bittrich, Dirk Labudde, Florian Heinke, 2015, BDAS.

Simulation of diffusion using a modular cell dynamic simulation system

Christoph Leberecht, Dirk Labudde, Florian Heinke, 2017, Silico Biol..

SequenceCEROSENE: a computational method and web server to visualize spatial residue neighborhoods at the sequence level

Sebastian Bittrich, Dirk Labudde, Florian Heinke, 2016, BioData Mining.

Bioinformatics Applications Note Analysis Assistant for Single-molecule Force Spectroscopy Data on Membrane Proteins—mptv

Frank Mueller, Dirk Labudde, Daniel J. Muller, 2022 .

Efficient unfolding pattern recognition in single molecule force spectroscopy data

Dirk Labudde, Bill Andreopoulos, D. Labudde, 2011, Algorithms for Molecular Biology.

Fit3D: a web application for highly accurate screening of spatial residue patterns in protein structure data

Sebastian Bittrich, Dirk Labudde, Florian Kaiser, 2016, Bioinform..

Semantic Tools for Forensics: A Highly Adaptable Framework

Dirk Labudde, Michael Spranger, Florian Heinke, 2012 .

StructureDistiller: Structural relevance scoring identifies the most informative entries of a contact map

Michael Schroeder, Sebastian Bittrich, Dirk Labudde, 2019, Scientific Reports.

Semantic Tools for Forensics: Towards Finding Evidence in Short Messages

Dirk Labudde, Michael Spranger, Eric Zuchantke, 2014 .

Triangle network motifs predict complexes by complementing high-error interactomes with structural information

Michael Schroeder, Christof Winter, Dirk Labudde, 2009, BMC Bioinformatics.

COPS - Cis/trans peptide bond conformation prediction of amino acids on the basis of secondary structure information

Dirk Labudde, Doreen Pahlke, Dietmar Leitner, 2005, Bioinform..

A novel pattern recognition algorithm to classify membrane protein unfolding pathways with high-throughput single-molecule force spectroscopy

Michael Schroeder, Annalisa Marsico, Dirk Labudde, 2007, Bioinform..

Membrane Protein Stability Analyses by Means of Protein Energy Profiles in Case of Nephrogenic Diabetes Insipidus

Dirk Labudde, Florian Heinke, D. Labudde, 2012, Comput. Math. Methods Medicine.

Integration of Genomic, Proteomic and Biomedical Information on the Semantic Web

Xiangji Huang, Aijun An, Dirk Labudde, 2008, ER Workshops.

Initial experience in the application of the PowerQuant™ system and the Investigator® ESSplex SE QS kit for aDNA analysis

Dirk Labudde, Anne-Marie Pflugbeil, S. Groß, 2015 .

Novel Computational Techniques for Thin-Layer Chromatography (TLC) Profiling and TLC Profile Similarity Scoring

Tommy Bergmann, Dirk Labudde, Rico Beier, 2017, BDAS.

Evaluation of Descriptor Algorithms of Biological Sequences and Distance Measures for the Intelligent Cluster Index (ICIx)

Wolfgang Benn, Dirk Labudde, Florian Heinke, 2016, BDAS.

Hybrid Cloud Architecture for Software-as-a-Service Provider to Achieve Higher Privacy and Decrease Security Concerns about Cloud Computing

Benjamin Krause, Wolfgang Benn, Dirk Labudde, 2014, CLOUD 2014.

GenoProof Mixture 3—New software and process to resolve complex DNA mixtures

Dirk Labudde, Frank M. Götz, Anne-Marie Pflugbeil, 2017 .

2D Visualisation of SMFS Data on Membrane Proteins

Jing Wang, Annalisa Marsico, Dirk Labudde, 2007, ER.

eProS—a database and toolbox for investigating protein sequence–structure–function relationships through energy profiles

Dirk Labudde, Florian Heinke, Daniel Stockmann, 2013, Nucleic Acids Res..

Automated Determination of Fingerprint Ridge Density and Fingerprint Size to Detect Sex Differences

Dirk Labudde, Marleen Mohaupt, Sieke Stoeter, 2021, GI-Jahrestagung.

Hypothesis-driven Case Analysis in 3D-Space as a Support for Forensic Casework

Tommy Bergmann, Dirk Labudde, Sven Becker, 2021, GI-Jahrestagung.

Selection of a DNA aptamer against norovirus capsid protein VP1.

Dirk Labudde, Rico Beier, Gianaurelio Cuniberti, 2014, FEMS microbiology letters.

A software tool for the prediction of Xaa-Pro peptide bond conformations in proteins based on 13C chemical shift statistics

Dirk Labudde, Hartmut Oschkinat, P. Schmieder, 2002, Journal of biomolecular NMR.

Characterizing the relation of functional and Early Folding Residues in protein structures using the example of aminoacyl-tRNA synthetases

Michael Schroeder, Sebastian Bittrich, Dirk Labudde, 2018, PloS one.

2Statistically significant dependence of the Xaa-Pro peptide bond conformation on secondary structure and amino acid sequence

Dirk Labudde, Christian Freund, Dietmar Leitner, 2004, BMC Structural Biology.

New Strategies for Evaluation and Analysis of SELEX Experiments

Dirk Labudde, Rico Beier, Elke Boschke, 2014, BioMed research international.