Simone Linz

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Displaying trees across two phylogenetic networks

Janosch Döcker, Simone Linz, Charles Semple, 2019, Theor. Comput. Sci..

On the Subnet Prune and Regraft Distance pdf

Simone Linz, Jonathan Klawitter, 2019, Electron. J. Comb..

Counting Trees in a Phylogenetic Network Is \#P-Complete

Simone Linz, Charles Semple, Katherine St. John, 2013, SIAM J. Comput..

Autumn Algorithm—Computation of Hybridization Networks for Realistic Phylogenetic Trees

Simone Linz, Daniel H. Huson, D. Huson, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Caterpillars on three and four leaves are sufficient to reconstruct normal networks pdf

Simone Linz, Charles Semple, C. Semple, 2020, ArXiv.

Algorithms and Complexity in Phylogenetics (Dagstuhl Seminar 19443)

Rolf Niedermeier, Simone Linz, Magnus Bordewich, 2019, Dagstuhl Reports.

A Reduction Algorithm for Computing The Hybridization Number of Two Trees

Simone Linz, Charles Semple, Magnus Bordewich, 2007, Evolutionary bioinformatics online.

Hybridization in Nonbinary Trees

Simone Linz, Charles Semple, C. Semple, 2009, IEEE ACM Trans. Comput. Biol. Bioinform..

Reflections on kernelizing and computing unrooted agreement forests pdf

Steven Kelk, Simone Linz, Georgios Stamoulis, 2020, ArXiv.

The Complexity of Finding Multiple Solutions to Betweenness and Quartet Compatibility

Simone Linz, Maria Luisa Bonet, Katherine St. John, 2011, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

On the complexity of computing the temporal hybridization number for two phylogenies

Simone Linz, Charles Semple, Peter J. Humphries, 2013, Discret. Appl. Math..

On the quirks of maximum parsimony and likelihood on phylogenetic networks.

Simone Linz, Charles Semple, Mareike Fischer, 2015, Journal of theoretical biology.

Computing Close to Optimal Weighted Shortest Paths in Practice

Simone Linz, Nguyet Tran, Michael J. Dinneen, 2020, ICAPS.

On the existence of a cherry-picking sequence

Janosch Döcker, Simone Linz, 2018, Theor. Comput. Sci..

New Reduction Rules for the Tree Bisection and Reconnection Distance

Steven Kelk, Simone Linz, S. Linz, 2019, Annals of Combinatorics.

A quadratic kernel for computing the hybridization number of multiple trees

Leo van Iersel, Simone Linz, S. Linz, 2012, Inf. Process. Lett..

Attaching leaves and picking cherries to characterise the hybridisation number for a set of phylogenies

Simone Linz, Charles Semple, C. Semple, 2017, Adv. Appl. Math..

A First Step Toward Computing All Hybridization Networks For Two Rooted Binary Phylogenetic Trees

Simone Linz, Benjamin Albrecht, Céline Scornavacca, 2011, J. Comput. Biol..

Placing quantified variants of 3-SAT and Not-All-Equal 3-SAT in the polynomial hierarchy pdf

Janosch Döcker, Simone Linz, Charles Semple, 2020, Theor. Comput. Sci..

Quantifying Hybridization in Realistic Time

Simone Linz, Charles Semple, Joshua Collins, 2011, J. Comput. Biol..

Optimizing tree and character compatibility across several phylogenetic trees

Simone Linz, Charles Semple, Katherine St. John, 2013, Theor. Comput. Sci..

PRODORIC: prokaryotic database of gene regulation

Edgar Wingender, Simone Linz, Dieter Jahn, 2003, Nucleic Acids Res..

Satisfying ternary permutation constraints by multiple linear orders or phylogenetic trees

Leo van Iersel, Steven Kelk, Nela Lekic, 2016, Theor. Comput. Sci..

Close Weighted Shortest Paths on 3D Terrain Surfaces

Simone Linz, Michael J. Dinneen, Nguyet Tran, 2020, SIGSPATIAL/GIS.

Deciding the existence of a cherry-picking sequence is hard on two trees pdf

Leo van Iersel, Steven Kelk, Janosch Döcker, 2017, Discret. Appl. Math..

Cycle Killer...Qu'est-ce que c'est? On the Comparative Approximability of Hybridization Number and Directed Feedback Vertex Set

Leo van Iersel, Steven Kelk, Leen Stougie, 2011, SIAM J. Discret. Math..

A tight kernel for computing the tree bisection and reconnection distance between two phylogenetic trees pdf

Steven Kelk, Simone Linz, S. Linz, 2018, SIAM J. Discret. Math..

Weakly displaying trees in temporal tree-child network pdf

Simone Linz, Katharina T. Huber, Vincent Moulton, 2020, ArXiv.

Display Sets of Normal and Tree-Child Networks

Simone Linz, Charles Semple, Janosch Doecker, 2019, Electron. J. Comb..

Quasi-Isometric Graph-Simplifications

Simone Linz, Bakhadyr Khoussainov, Kh'i-U'i Soo, 2021 .

Non-essential arcs in phylogenetic networks

Simone Linz, Charles Semple, 2021 .

Reflections on kernelizing and computing unrooted agreement forests

Steven Kelk, Simone Linz, Georgios Stamoulis, 2020, Ann. Oper. Res..

Reticulation in evolution

Simone Linz, S. Linz, 2008 .

Analyzing and reconstructing reticulation networks under timing constraints

Simone Linz, Charles Semple, Tanja Stadler, 2010, Journal of mathematical biology.

Phylogenetic Networks that Display a Tree Twice

Simone Linz, Charles Semple, C. Semple, 2014, Bulletin of mathematical biology.

A Cluster Reduction for Computing the Subtree Distance Between Phylogenies

Simone Linz, Charles Semple, C. Semple, 2011 .

Lost in space? Generalising subtree prune and regraft to spaces of phylogenetic networks.

Simone Linz, Charles Semple, Magnus Bordewich, 2017, Journal of theoretical biology.

Hybridization in Non-Binary Trees

Simone Linz, Charles Semple, 2008 .

Cherry Picking: A Characterization of the Temporal Hybridization Number for a Set of Phylogenies

Simone Linz, Charles Semple, C. Semple, 2013, Bulletin of Mathematical Biology.

Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations

Simone Linz, Vincent Moulton, Taoyang Wu, 2016, Journal of mathematical biology.

Identifying a species tree subject to random lateral gene transfer.

Simone Linz, Mike Steel, Daniel H Huson, 2012, Journal of theoretical biology.