Susan P. Holmes

发表

Visualization and Statistical Comparisons of Microbial Communities Using R Packages on Phylochip Data

Alexander V. Alekseyenko, Susan P. Holmes, Alden Timme, 2011, Pacific Symposium on Biocomputing.

Adaptive importance sampling for network growth models

Susan P. Holmes, Adam Guetz, S. Holmes, 2011, Ann. Oper. Res..

Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment

Susan P. Holmes, Kris Sankaran, Les Dethlefsen, 2017, PLoS Comput. Biol..

HIV-1 Subtype B Protease and Reverse Transcriptase Amino Acid Covariation

Susan P. Holmes, Soo-Yon Rhee, Tommy F. Liu, 2007, PLoS Comput. Biol..

Multi-Table Differential Correlation Analysis of Neuroanatomical and Cognitive Interactions in Turner Syndrome

Allan L. Reiss, David Hong, Susan P. Holmes, 2017, Neuroinformatics.

Threshold Graph Limits and Random Threshold Graphs

Svante Janson, Persi Diaconis, Susan P. Holmes, 2008, Internet Math..

Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking

Susan P. Holmes, Paul J. McMurdie, S. Holmes, 2014, Bioinform..

Gene expression network analysis and applications to immunology

Serban Nacu, Susan P. Holmes, Peter P. Lee, 2007, Bioinform..

Waste Not , Want Not : Why Rarefying Microbiome Data is Inadmissible . October 1 , 2013

Susan P. Holmes, Paul J. McMurdie, S. Holmes, 2013 .

Random Spatial Structure of Geometric Deformations and Bayesian Nonparametrics

Xavier Pennec, Susan P. Holmes, Christof Seiler, 2013, GSI.

Tracking Network Dynamics: a review of distances and similarity metrics pdf

Claire Donnat, Susan P. Holmes, S. Holmes, 2018, ArXiv.

Positive Curvature and Hamiltonian Monte Carlo

Susan P. Holmes, Christof Seiler, Simon Rubinstein-Salzedo, 2014, NIPS.

Reproducible Research Workflow in R for the Analysis of Personalized Human Microbiome Data

Susan P. Holmes, Benjamin J. Callahan, Julia Fukuyama, 2016, PSB.

de Finetti Priors using Markov chain Monte Carlo computations

Persi Diaconis, Susan P. Holmes, Sergio Bacallado, 2015, Stat. Comput..

Template Shape Estimation: Correcting an Asymptotic Bias pdf

Xavier Pennec, Nina Miolane, Susan P. Holmes, 2016, SIAM J. Imaging Sci..

Denoising PCR-amplified metagenome data

Susan P. Holmes, Daniel S. Fisher, Benjamin J. Callahan, 2012, BMC Bioinformatics.

Comparisons of Distance Methods for Combining Covariates and Abundances in Microbiome Studies

Susan P. Holmes, Les Dethlefsen, Paul J. McMurdie, 2011, Pacific Symposium on Biocomputing.

Addressing Geographical Data Errors in a Classification Tree for Soil Unit Prediction

Philippe Lagacherie, Susan P. Holmes, P. Lagacherie, 1997, Int. J. Geogr. Inf. Sci..

A multifaceted analysis of HIV-1 protease multidrug resistance phenotypes

Susan P. Holmes, Soo-Yon Rhee, Robert W. Shafer, 2011, BMC Bioinformatics.

A classification model for G-to-A hypermutation in hepatitis B virus ultra-deep pyrosequencing reads

Susan P. Holmes, Tommy F. Liu, Robert W. Shafer, 2010, Bioinform..

Bioinformatics and Management Science: Some Common Tools and Techniques

Ali E. Abbas, Susan P. Holmes, S. Holmes, 2004, Oper. Res..

phyloseq: A Bioconductor Package for Handling and Analysis of High-Throughput Phylogenetic Sequence Data

Susan P. Holmes, Paul J. McMurdie, S. Holmes, 2011, Pacific Symposium on Biocomputing.

c ○ 2007 Society for Industrial and Applied Mathematics Dynamical Bias in the Coin Toss ∗

Persi Diaconis, Susan P. Holmes, Richard Montgomery, 2022 .

Bayesian Unidimensional Scaling for visualizing uncertainty in high dimensional datasets with latent ordering of observations

Susan P. Holmes, Lan H. Nguyen, S. Holmes, 2017, BMC Bioinformatics.

CytoGLMM: conditional differential analysis for flow and mass cytometry experiments

Susan P. Holmes, Christof Seiler, Anne-Maud Ferreira, 2021, BMC Bioinform..

A Statistical Perspective on the Challenges in Molecular Microbial Biology

Susan P. Holmes, Pratheepa Jeganathan, 2021 .

Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration

Huldrych F. Günthard, Dominique Goedhals, Susan P. Holmes, 2017, EBioMedicine.

Constrained patterns of covariation and clustering of HIV-1 non-nucleoside reverse transcriptase inhibitor resistance mutations

Susan P. Holmes, Soo-Yon Rhee, Robert W. Shafer, 2010, The Journal of antimicrobial chemotherapy.

Inference of Dynamic Regimes in the Microbiome

Susan P. Holmes, Kris Sankaran, S. Holmes, 2017, 1712.00067.