Joaquín Dopazo

发表

Gene expression data preprocessing

Joaquín Dopazo, Javier Herrero, Ramón Díaz-Uriarte, 2003, Bioinform..

Reducing the effect of the data order in algorithms for constructing phylogenetic trees

Joaquín Dopazo, 1988, Comput. Appl. Biosci..

Ontologies and Functional Genomics

Joaquín Dopazo, Fatima Al-Shahrour, 2005, Data Analysis and Visualization in Genomics and Proteomics.

A framework for genomic sequencing on clusters of multicore and manycore processors

Joaquín Dopazo, Enrique S. Quintana-Ortí, Ignacio Medina, 2018, Int. J. High Perform. Comput. Appl..

Concurrent and Accurate RNA Sequencing on Multicore Platforms pdf

Joaquín Dopazo, Enrique S. Quintana-Ortí, Ignacio Medina, 2013, ArXiv.

Progress in pharmacogenetics: consortiums and new strategies

Joaquín Dopazo, Munir Pirmohamed, Gérard Siest, 2016, Drug metabolism and personalized therapy.

Select Your SNPs (SYSNPs): a web tool for automatic and massive selection of SNPs

Joaquín Dopazo, Arcadi Navarro, Ignacio Medina, 2012, Int. J. Data Min. Bioinform..

From genes to functional classes in the study of biological systems

Joaquín Dopazo, Fátima Al-Shahrour, David Montaner, 2007, BMC Bioinformatics.

HGVA: the Human Genome Variation Archive

Joaquín Dopazo, Marta Bleda, Joaquín Tárraga, 2017, Nucleic Acids Res..

Functional variant prioritization in rare diseases using a mechanistic approach

Joaquín Dopazo, Rosario Carmona, Ana M. Pérez-Gutiérrez, 2019 .

Exploring the druggable space around the Fanconi anemia pathway using machine learning and mechanistic models

Carlos Loucera, Marina Esteban-Medina, Joaquín Dopazo, 2019, BMC Bioinformatics.

ngsCAT: a tool to assess the efficiency of targeted enrichment sequencing

Joaquín Dopazo, J. P. Florido, Antonio Rueda, 2014, Bioinform..

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data

Joaquín Dopazo, Ana Conesa, Fernando García-Alcalde, 2010, Bioinform..

DNMAD: web-based diagnosis and normalization for microarray data

Joaquín Dopazo, Ramón Díaz-Uriarte, Juan M. Vaquerizas, 2004, Bioinform..

VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy

Joaquín Dopazo, Ignacio Medina, Joaquín Tárraga, 2017, BMC Bioinformatics.

PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins

Joaquín Dopazo, Peer Bork, Jaime Huerta-Cepas, 2014, Nucleic Acids Res..

Understanding disease mechanisms with models of signaling pathway activities

Joaquín Dopazo, Francisco Salavert, David Montaner, 2014, BMC Systems Biology.

Functional profiling of microarray experiments using text-mining derived bioentities

Joaquín Dopazo, Fátima Al-Shahrour, David Montaner, 2007, Bioinform..

ELIXIR Implementation Study End Report: Remote real-time visualization of human rare disease genomics data (RD-Connect) stored at the EGA

Joaquín Dopazo, Alfonso Valencia, Salvador Capella-Gutiérrez, 2018 .

An image-processing approach to dotplots: an X-Window-based program for interactive analysis of dotplots derived from sequence and structural data

Joaquín Dopazo, Emilio L. Zapata, José María Carazo, 1995, Comput. Appl. Biosci..

Drug repurposing for COVID-19 using machine learning and mechanistic models of signal transduction circuits related to SARS-CoV-2 infection

Carlos Loucera, Marina Esteban-Medina, Kinza Rian, 2020, Signal Transduction and Targeted Therapy.

Chemometrics and Intelligent Laboratory Systems

Joaquín Dopazo, Alberto Ferrer, Ana Conesa, 2011 .

Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication

Joaquín Dopazo, Jaime Huerta-Cepas, Martijn A. Huynen, 2011, Briefings Bioinform..

A web tool for the design and management of panels of genes for targeted enrichment and massive sequencing for clinical applications

Joaquín Dopazo, Ignacio Medina, Francisco García-García, 2014, Nucleic Acids Res..

Scalable RNA Sequencing on Clusters of Multicore Processors

Joaquín Dopazo, Enrique S. Quintana-Ortí, Ignacio Medina, 2015, TrustCom 2015.

Reference genome assessment from a population scale perspective: an accurate profile of variability and noise

Joaquín Dopazo, Roberto Alonso, Antonio López-Quílez, 2017, Bioinform..

Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies

Joaquín Dopazo, Ignacio Medina, Joaquín Tárraga, 2009, Nucleic Acids Res..

A comprehensive and centralized database for exploring omics data in Autoimmune Diseases

Joaquín Dopazo, Fátima Al-Shahrour, Daniel Toro-Domínguez, 2020 .

A dynamic pipeline for RNA sequencing on multicore processors

Joaquín Dopazo, Enrique S. Quintana-Ortí, Sergio Barrachina, 2013, EuroMPI.

Finding SNPs with Putative Phenotypic Effect at Transcriptional Level

Joaquín Dopazo, Fátima Al-Shahrour, Juan M. Vaquerizas, 2004, Spanish Bioinformatics Conference.

Web-based network analysis and visualization using CellMaps

Joaquín Dopazo, Marta Bleda, Francisco Salavert, 2016, Bioinform..

Estimation of the intrinsic rate of natural increase and its error by both algebraic and resampling approaches

Joaquín Dopazo, Enrique Silvestre, Ana Taberner, 1993, Comput. Appl. Biosci..

ETE: a python Environment for Tree Exploration

Joaquín Dopazo, Toni Gabaldón, Jaime Huerta-Cepas, 2010, BMC Bioinformatics.

Integrated gene set analysis for microRNA studies

Joaquín Dopazo, David Montaner, Francisco García-García, 2014, Bioinform..

Genome analysis Advance Access publication February 18, 2011 B2G-FAR, a species-centered GO annotation repository

Joaquín Dopazo, Thomas Rattei, Ana Conesa, 2022 .

Qualimap: evaluating next-generation sequencing alignment data

Joaquín Dopazo, Stefan Götz, Sonia Tarazona, 2012, Bioinform..