Micah Dunthorn

Swarm: robust and fast clustering method for amplicon-based studies

Frédéric Mahé, Torbjørn Rognes, Christopher Quince, 2014, PeerJ.

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

Stéphane Audic, Frédéric Mahé, Fabrice Not, 2012, Nucleic Acids Res..

Swarm v3: towards tera-scale amplicon clustering

Alexandros Stamatakis, Lucas Czech, Torbjørn Rognes, 2021, Bioinform..

Comparison of three clustering approaches for detecting novel environmental microbial diversity

Thorsten Stoeck, Dominik Forster, Micah Dunthorn, 2016, PeerJ.

Comparing High‐throughput Platforms for Sequencing the V4 Region of SSU‐rDNA in Environmental Microbial Eukaryotic Diversity Surveys

John Bunge, Thorsten Stoeck, Tobias Paprotka, 2015, The Journal of eukaryotic microbiology.

Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context.

Alexandros Stamatakis, Stéphane Audic, Thorsten Stoeck, 2014, Molecular biology and evolution.

Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms

Stéphane Audic, Eric Bapteste, Thorsten Stoeck, 2015, BMC Biology.

Patterns of Rare and Abundant Marine Microbial Eukaryotes

Jean-Michel Claverie, Kamran Shalchian-Tabrizi, Stéphane Audic, 2014, Current Biology.

Evaluating Support for the Current Classification of Eukaryotic Diversity

Laura Wegener Parfrey, Debashish Bhattacharya, Micah Dunthorn, 2006, PLoS genetics.